Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G212232 Manihot esculenta HOM05D007641 ORTHO05D007630 0.0e+00 1433.7 729 100.0
Potri.013G157800 Populus trichocarpa HOM05D007641 ORTHO05D007630 2.8e-140 503.4 763 46.0
Sabra13G0126700 Salix brachista HOM05D007641 ORTHO05D002352 5.4e-131 472.6 745 42.7
QL01p024477 Quercus lobata HOM05D007641 ORTHO05D007630 7.0e-115 419.1 698 42.0
Atru.chr10.2293 Acer truncatum HOM05D007641 ORTHO05D007630 4.0e-110 403.3 767 39.2
CiPaw.13G063300 Carya illinoinensis HOM05D007641 ORTHO05D007630 1.7e-97 361.3 711 39.4
Dinv28733 Davidia involucrata HOM05D007641 ORTHO05D007630 4.7e-95 353.2 770 36.9
Actinidia34497 Actinidia chinensis HOM05D007641 ORTHO05D007630 3.0e-81 307.4 711 35.4
RcHm_v2.0_Chr5g0073231 Rosa chinensis HOM05D007641 ORTHO05D007630 5.3e-78 296.6 763 33.6
Haze_24474 Corylus avellana HOM05D007641 ORTHO05D007630 9.0e-78 295.8 583 36.7
Thecc.09G364100 Theobroma cacao HOM05D007641 ORTHO05D007630 9.0e-78 295.8 764 34.7
Duzib168G1492 Durio zibethinus HOM05D007641 ORTHO05D007630 2.4e-75 287.7 768 33.3
TWI79G1607 Tripterygium wilfordii HOM05D007641 ORTHO05D007630 1.6e-74 285.0 725 34.1
FAN25G3378 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.8e-73 281.6 765 32.2
FvH4_3g40550 Fragaria vesca HOM05D007641 ORTHO05D007630 1.9e-72 278.1 757 33.0
FAN16G1217 Fragaria x ananassa HOM05D007641 ORTHO05D007630 1.4e-70 271.9 780 32.6
FAN11G1956 Fragaria x ananassa HOM05D007641 ORTHO05D007630 2.7e-66 257.7 719 31.6
Gohir.A08G000032 Gossypium hirsutum HOM05D007641 ORTHO05D007630 3.4e-61 240.7 744 31.9
Prupe.6G040800 Prunus persica HOM05D007641 ORTHO05D007630 7.6e-61 239.6 738 33.1
CANSAT54G2173 Cannabis sativa HOM05D007641 ORTHO05D007630 1.4e-59 235.3 732 33.7
Glyma.18G052000 Glycine max HOM05D007641 ORTHO05D007630 9.7e-56 222.6 781 30.0
Rhsim01G0243500 Rhododendron simsii HOM05D007641 ORTHO05D007630 2.0e-53 214.9 691 29.8
Aqoxy1G01263 Aquilegia oxysepala HOM05D007641 ORTHO05D007630 5.0e-52 210.3 708 30.1
Gorai.004G000600 Gossypium raimondii HOM05D007641 ORTHO05D007630 3.6e-50 204.1 746 29.2
Sed0007856 Sechium edule HOM05D007641 ORTHO05D007630 1.8e-49 201.8 691 32.0
vmacro14640 Vaccinium macrocarpon HOM05D007641 ORTHO05D007630 8.8e-49 199.5 571 30.3
Gohir.D12G000401 Gossypium hirsutum HOM05D007641 ORTHO05D007630 3.3e-48 197.6 647 30.9
ClCG02G019020 Citrullus lanatus HOM05D007641 ORTHO05D007630 1.7e-47 195.3 724 30.1
Phvul.006G079400 Phaseolus vulgaris HOM05D007641 ORTHO05D007630 3.1e-46 191.0 776 30.2
Nn2g10289 Nelumbo nucifera HOM05D007641 ORTHO05D007630 2.6e-45 188.0 714 28.7
AL4G25360 Arabidopsis lyrata HOM05D001940 ORTHO05D007630 2.2e-44 184.9 574 31.9
MELO3C019578.2 Cucumis melo HOM05D007641 ORTHO05D007630 2.2e-44 184.9 690 31.3
Carub.0004s1164 Capsella rubella HOM05D001940 ORTHO05D007630 1.1e-43 182.6 572 29.7
Gohir.D08G007350 Gossypium hirsutum HOM05D007641 ORTHO05D007630 1.4e-43 182.2 742 28.4
AT2G30480 Arabidopsis thaliana HOM05D001940 ORTHO05D007630 9.4e-43 179.5 576 31.2
COL.COLO4_11217 Corchorus olitorius HOM05D007641 ORTHO05D007630 2.1e-42 178.3 606 29.4
CsaV3_6G013130 Cucumis sativus L. HOM05D007641 ORTHO05D007630 3.6e-42 177.6 781 28.7
Sp4g13010 Schrenkiella parvula HOM05D001940 ORTHO05D007630 7.9e-42 176.4 566 28.1
Cpa.g.sc2.293 Carica papaya HOM05D007641 ORTHO05D007630 1.1e-40 172.6 395 35.2
Hma1.2p1_0119F.1_g056956 Hydrangea macrophylla HOM05D007641 ORTHO05D007630 1.7e-39 168.7 362 35.1
Psat5g147960 Pisum sativum HOM05D007641 ORTHO05D007630 8.2e-39 166.4 796 28.1
THA.LOC104815825 Tarenaya hassleriana HOM05D001940 ORTHO05D007630 5.0e-36 157.1 603 30.8
Lj6g0005873 Lotus japonicus HOM05D007641 ORTHO05D007630 2.5e-35 154.8 770 28.7
TAR636G3352 Trochodendron aralioides HOM05D007641 ORTHO05D007630 1.4e-33 149.1 364 33.8
Gohir.1Z049529 Gossypium hirsutum HOM05D007641 ORTHO05D007630 4.0e-33 147.5 459 31.4
Ciclev10004023m.g Citrus clementina HOM05D007641 ORTHO05D007630 5.2e-33 147.1 333 34.5
Gorai.012G000300 Gossypium raimondii HOM05D007641 ORTHO05D007630 6.7e-33 146.7 518 30.1
Lalb_Chr18g0054201 Lupinus albus HOM05D007641 ORTHO05D007630 1.2e-32 146.0 589 28.9
GSVIVG01024555001 Vitis vinifera HOM05D007641 ORTHO05D007630 3.3e-32 144.4 219 50.2
VMungo0540G0343 Vigna mungo HOM05D007641 ORTHO05D007630 1.7e-31 142.1 748 26.7
Sopen09g001120 Solanum pennellii HOM05D014625 ORTHO05D007630 3.7e-31 141.0 614 28.7
Sc23g0005090 Simmondsia chinensis HOM05D007641 ORTHO05D007630 1.1e-30 139.4 622 30.5
Ciclev10001550m.g Citrus clementina HOM05D007641 ORTHO05D007630 1.8e-30 138.7 322 34.2
MBI15_g36478_MAGBIO Magnolia biondii HOM05D007641 ORTHO05D007630 1.2e-29 136.0 479 29.6
Migut.D00817 Erythranthe guttata HOM05D007641 ORTHO05D007630 2.0e-29 135.2 474 32.1
arahy.Tifrunner.gnm1.ann1.4PHV2I Arachis hypogaea HOM05D007641 ORTHO05D007630 2.7e-29 134.8 715 27.4
Medtr3g467390 Medicago truncatula HOM05D007641 ORTHO05D007630 2.2e-28 131.7 654 28.3
TPR.G13882 Trifolium pratense HOM05D007641 ORTHO05D007630 2.9e-28 131.3 641 27.6
Solyc09g005140.2 Solanum lycopersicum HOM05D014625 ORTHO05D007630 1.5e-27 129.0 615 28.3
HanXRQChr08g0230341 Helianthus annuus HOM05D007641 ORTHO05D007630 5.5e-27 127.1 449 27.2
BcaB02g10326 Brassica carinata HOM05D001940 ORTHO05D007630 2.1e-26 125.2 453 28.9
TAR633G1590 Trochodendron aralioides HOM05D007641 ORTHO05D007630 6.1e-26 123.6 273 36.3
BcaC02g11137 Brassica carinata HOM05D001940 ORTHO05D007630 8.0e-26 123.2 451 28.4
Thhalv10017756m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 3.0e-25 121.3 348 29.9
PSO170G4823 Papaver somniferum HOM05D007641 ORTHO05D007630 2.6e-24 118.2 394 28.7
C04p20070 Brassica napus HOM05D001940 ORTHO05D007630 9.8e-24 116.3 460 27.0
Hund18459 Selenicereus undatus HOM05D029401 ORTHO05D007630 9.8e-24 116.3 279 35.1
BolC4t23545H Brassica oleracea HOM05D001940 ORTHO05D007630 1.3e-23 115.9 269 37.2
PSO017G1347 Papaver somniferum HOM05D007641 ORTHO05D007630 4.1e-22 110.9 382 30.1
A05p14980 Brassica napus HOM05D001940 ORTHO05D007630 1.2e-21 109.4 435 28.5
Lsat_1_v5_gn_9_13760 Lactuca sativa HOM05D007641 ORTHO05D007630 1.6e-21 109.0 389 31.9
HPP92_015425 Vanilla planifolia HOM05D007641 ORTHO05D007630 5.5e-19 100.5 388 28.6
BraA05t20424Z Brassica rapa HOM05D001940 ORTHO05D007630 9.5e-19 99.8 372 30.6
Os01g0167700 Oryza sativa ssp. japonica HOM05D052079 ORTHO05D007630 1.2e-18 99.4 475 25.5
Ca_15061_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 1.0e-17 96.3 292 31.8
ECA247G3209 Erigeron canadensis HOM05D007641 ORTHO05D007630 2.3e-17 95.1 743 23.1
arahy.Tifrunner.gnm1.ann1.F8RHVN Arachis hypogaea HOM05D007641 ORTHO05D007630 6.8e-17 93.6 569 26.2
Gorai.002G184200 Gossypium raimondii HOM05D007641 ORTHO05D007630 2.6e-16 91.7 167 38.9
Nitab4.5_0001868g0030 Nicotiana tabacum HOM05D014625 ORTHO05D007630 9.8e-16 89.7 196 34.2
Oeu064683.1 Olea europaea HOM05D007641 ORTHO05D007630 1.1e-14 86.3 583 25.0
CARHR123930 Cardamine hirsuta HOM05D001940 ORTHO05D007630 1.4e-14 85.9 231 32.0
Peaxi162Scf00605g00515 Petunia axillaris HOM05D014625 ORTHO05D007630 5.4e-14 84.0 279 28.0
Zm00001eb336420 Zea mays HOM05D052079 ORTHO05D007630 9.2e-14 83.2 558 25.1
SGA_v2.0_scaffold20G09288 Striga asiatica HOM05D007641 ORTHO05D007630 5.9e-13 80.5 445 25.2
Glyma.11G198150 Glycine max HOM05D007641 ORTHO05D007630 1.0e-12 79.7 165 35.8
Ah.08g218910 Amaranthus hybridus HOM05D000020 ORTHO05D002192 2.3e-12 78.6 379 26.6
DCAR_018642 Daucus carota HOM05D007641 ORTHO05D007630 1.1e-11 76.3 169 35.5
PGR102G3245 Punica granatum HOM05D007641 ORTHO05D007630 1.9e-11 75.5 420 29.3
Cpa.g.sc2.294 Carica papaya HOM05D007641 ORTHO05D007630 5.6e-11 73.9 94 43.6
AUR62001158 Chenopodium quinoa HOM05D029401 ORTHO05D007630 1.4e-09 69.3 751 23.8
Gohir.D01G148301 Gossypium hirsutum HOM05D007641 ORTHO05D007630 6.8e-09 67.0 167 32.3
ATR1127G234 Amborella trichopoda HOM05D007641 ORTHO05D007630 1.2e-08 66.2 231 25.5
Nitab4.5_0000002g0280 Nicotiana tabacum HOM05D014625 ORTHO05D007630 5.7e-08 63.9 347 23.9
CSS0002773 Camellia sinensis var. sinensis HOM05D024992 ORTHO05D022110 2.9e-07 61.6 104 35.6
AUR62016518 Chenopodium quinoa HOM05D029401 ORTHO05D007630 4.9e-07 60.8 294 28.2
Thhalv10017933m.g Eutrema salsugineum HOM05D001940 ORTHO05D007630 8.3e-07 60.1 102 45.1
Ca_15060_v3 Cicer arietinum L. HOM05D007641 ORTHO05D007630 2.4e-06 58.5 532 23.7
PSO384G0550 Papaver somniferum HOM05D007641 ORTHO05D007630 3.2e-06 58.2 78 41.0


User provided reference genes

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