Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 2014.6 1014 100.0
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1592.0 1015 79.8
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1567.0 1014 77.5
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1517.7 1013 75.5
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1511.9 1015 76.2
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1505.0 1015 75.5
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1500.7 1018 75.1
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1492.6 1015 73.6
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1491.5 1014 74.9
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1491.1 1015 73.1
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1489.9 1080 71.9
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1488.8 1015 74.2
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1478.8 1077 71.6
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1476.1 1015 73.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1474.5 987 74.8
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1472.2 1014 73.9
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1469.5 1021 73.0
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1467.6 1015 72.9
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1459.9 1016 73.7
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1456.8 997 73.4
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1455.3 997 73.2
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1451.8 1015 73.4
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1449.1 1016 73.1
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1439.1 1015 72.1
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1432.2 1012 71.1
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1424.1 1018 71.6
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1413.3 988 73.0
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1412.1 1011 70.2
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1399.8 1016 69.6
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1394.4 1003 70.6
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1391.7 1021 69.6
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1380.9 1021 69.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1363.6 1016 67.8
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1358.6 1017 67.4
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1357.4 1015 67.9
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1355.9 1017 67.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1347.0 1061 66.2
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1343.2 1014 67.3
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1340.5 1010 67.6
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1338.9 1017 66.7
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1337.8 1016 66.5
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1335.1 1016 66.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1327.4 1017 66.2
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1321.6 1017 65.7
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1321.2 1017 66.2
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1317.8 995 66.8
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1315.4 1022 65.8
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1313.1 1020 66.7
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1304.3 1015 65.7
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1303.5 1032 65.5
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1300.4 1017 65.1
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1298.1 1014 63.9
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1297.3 1017 64.9
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1294.6 1017 65.4
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1290.0 1017 64.7
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1290.0 1015 64.5
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1288.1 1015 64.5
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1282.3 1009 65.5
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1281.2 1012 63.7
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1279.6 1016 64.0
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1276.9 1012 63.7
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1276.2 1017 64.3
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1275.4 1019 64.1
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1272.7 1018 63.9
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1271.9 1011 64.5
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1271.5 1016 64.1
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1271.1 1016 64.1
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1271.1 1016 64.1
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1269.2 1016 64.0
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1267.3 1016 63.8
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1265.0 1013 62.5
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1260.7 1012 62.4
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1256.5 1026 63.5
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1252.3 1008 64.4
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1251.9 1014 63.9
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1250.7 1009 63.0
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1235.7 1019 62.6
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1224.2 1015 62.4
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1223.4 779 78.7
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1183.7 1013 61.0
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1177.2 983 62.5
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1174.5 779 76.8
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 0.0e+00 1120.1 797 71.6
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 0.0e+00 1113.2 1017 57.6
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 0.0e+00 1075.8 1022 55.2
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 2.7e-306 1055.4 1020 55.0
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 5.5e-291 1004.6 694 71.9
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 6.3e-271 937.9 595 77.5
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 6.9e-270 934.5 611 74.6
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.9e-268 929.1 979 52.0
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 9.4e-267 924.1 756 62.0
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 3.8e-252 875.5 1032 46.8
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 3.3e-248 862.4 1036 46.3
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 7.7e-245 851.3 776 55.0
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 2.2e-244 849.7 994 47.6
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 7.7e-237 824.7 878 49.5
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.1e-222 777.7 1012 45.3
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 3.4e-208 729.6 548 68.1
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 4.6e-205 719.2 545 67.3
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 2.8e-202 709.9 505 68.7
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 1.6e-194 684.1 454 76.7
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 8.1e-194 681.8 434 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.5e-187 661.0 1054 38.9
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 8.1e-186 655.2 439 76.8
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 3.8e-175 619.8 1034 38.0
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-172 610.5 529 61.1
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 5.6e-171 605.9 573 57.8
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 2.8e-170 603.6 511 58.7
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 1.3e-159 568.2 631 50.6
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.4e-156 558.1 460 60.2
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.4e-156 558.1 511 56.0
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 4.8e-154 549.7 1025 34.3
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.5e-118 429.9 430 55.1
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-113 415.2 237 85.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 3.5e-112 410.6 534 44.0
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.3e-111 408.7 290 73.8
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 6.6e-111 406.4 893 30.9
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.0e-103 382.5 237 81.9
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 6.6e-103 379.8 297 62.0
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 8.4e-82 309.7 332 49.1
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.0e-75 288.5 315 48.6
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 4.4e-75 287.3 316 49.4
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 4.3e-70 270.8 457 38.1
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 9.0e-60 236.5 392 42.1
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-53 215.7 275 46.2
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-52 212.2 426 34.7
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 2.9e-50 204.9 163 65.6
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 2.9e-50 204.9 163 65.6
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 2.7e-48 198.4 109 86.2
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 5.9e-43 180.6 755 26.0
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 8.5e-42 176.8 243 44.4
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 2.5e-41 175.3 805 25.1
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 4.8e-37 161.0 419 32.5
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-35 156.4 415 31.6
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 2.0e-35 155.6 760 24.7
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-33 147.5 392 31.9
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 7.2e-33 147.1 161 51.6
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 3.6e-32 144.8 113 68.1
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 3.6e-32 144.8 314 34.1
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 9.7e-30 136.7 122 63.1
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 3.7e-29 134.8 154 46.1
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 3.1e-28 131.7 76 85.5
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 1.2e-24 119.8 82 72.0
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.6e-24 119.4 344 26.7
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 4.1e-20 104.8 166 40.4
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-18 99.8 134 42.5
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 1.7e-18 99.4 61 80.3
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 8.5e-18 97.1 89 52.8
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 2.2e-13 82.4 65 63.1
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-12 79.7 406 22.7
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 9.1e-12 77.0 46 80.4
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 5.9e-11 74.3 98 45.9
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.7e-10 72.8 49 65.3
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 1.7e-10 72.8 69 56.5
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 6.1e-08 64.3 97 42.3
COL.COLO4_30327 Corchorus olitorius HOM05D002927 ORTHO05D003841 8.8e-07 60.5 293 24.6
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 4.4e-06 58.2 266 24.1


User provided reference genes

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