Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 1.5e-124 449.9 288 100.0
Eucgr.J01845 Eucalyptus grandis HOM05D008517 ORTHO05D010482 2.9e-27 126.7 167 37.1
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 7.0e-26 122.1 159 40.9
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 1.3e-24 117.9 159 39.6
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 3.0e-24 116.7 159 39.0
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 8.6e-24 115.2 166 36.1
Aa31LG5G6260 Aethionema arabicum HOM05D008517 ORTHO05D010482 1.5e-23 114.4 159 37.7
Lj6g0010191 Lotus japonicus HOM05D008517 ORTHO05D010482 1.5e-23 114.4 166 34.3
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 1.9e-23 114.0 159 38.4
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 1.9e-23 114.0 159 38.4
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 1.9e-23 114.0 159 38.4
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 1.9e-23 114.0 159 38.4
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 3.3e-23 113.2 159 38.4
Lalb_Chr15g0085691 Lupinus albus HOM05D008517 ORTHO05D010482 7.3e-23 112.1 166 36.1
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 1.6e-22 110.9 161 37.9
Lj2A1104T76 Lonicera japonica HOM05D008517 ORTHO05D010482 1.6e-22 110.9 154 39.6
THA.LOC104800796 Tarenaya hassleriana HOM05D008517 ORTHO05D010482 1.6e-22 110.9 163 38.0
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 2.1e-22 110.5 159 37.7
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 2.1e-22 110.5 159 37.7
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 2.8e-22 110.2 159 37.7
Carub.0004s1167 Capsella rubella HOM05D008517 ORTHO05D010482 4.7e-22 109.4 159 38.4
CARHR123960 Cardamine hirsuta HOM05D008517 ORTHO05D010482 6.2e-22 109.0 159 38.4
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 1.0e-21 108.2 159 37.1
Rhsim13G0058200 Rhododendron simsii HOM05D008517 ORTHO05D010482 1.0e-21 108.2 158 37.3
Psat5g147520 Pisum sativum HOM05D008517 ORTHO05D010482 1.4e-21 107.8 168 34.5
AT2G30505 Arabidopsis thaliana HOM05D008517 ORTHO05D010482 6.8e-21 105.5 159 36.5
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 6.8e-21 105.5 159 36.5
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 6.8e-21 105.5 159 36.5
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 1.2e-20 104.8 163 35.0
AL4G25390 Arabidopsis lyrata HOM05D008517 ORTHO05D010482 2.0e-20 104.0 159 35.8
Medtr3g062470 Medicago truncatula HOM05D008517 ORTHO05D010482 2.0e-20 104.0 166 33.1
Phvul.006G080100 Phaseolus vulgaris HOM05D008517 ORTHO05D010482 2.0e-20 104.0 166 35.5
Ca_15071_v3 Cicer arietinum L. HOM05D008517 ORTHO05D010482 4.4e-20 102.8 167 32.3
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 5.8e-20 102.4 165 33.9
TPR.G13887 Trifolium pratense HOM05D008517 ORTHO05D010482 9.8e-20 101.7 169 32.5
arahy.Tifrunner.gnm1.ann1.Q24W9G Arachis hypogaea HOM05D008517 ORTHO05D010482 1.3e-19 101.3 166 33.1
Dinv12288 Davidia involucrata HOM05D008517 ORTHO05D010482 6.4e-19 99.0 165 30.9
Glyma.18G051200 Glycine max HOM05D008517 ORTHO05D010482 1.9e-18 97.4 162 33.3
arahy.Tifrunner.gnm1.ann1.92WL97 Arachis hypogaea HOM05D008517 ORTHO05D010482 2.4e-18 97.1 166 31.9
Glyma.11G199600 Glycine max HOM05D008517 ORTHO05D010482 3.2e-18 96.7 162 34.0
CSS0018299 Camellia sinensis var. sinensis HOM05D008517 ORTHO05D010482 1.6e-17 94.4 165 32.7
PGR119G1844 Punica granatum HOM05D008517 ORTHO05D010482 3.5e-17 93.2 168 32.7
MSTRG.12716 Avicennia marina HOM05D008517 ORTHO05D010482 1.3e-16 91.3 158 34.2
MD11G1051900 Malus domestica HOM05D016692 ORTHO05D010482 1.3e-16 91.3 159 31.4
Actinidia23156 Actinidia chinensis HOM05D000033 ORTHO05D000913 5.0e-16 89.4 161 31.1
Atru.chr10.2344 Acer truncatum HOM05D008517 ORTHO05D010482 4.3e-15 86.3 164 32.3
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 9.5e-15 85.1 167 26.9
Prupe.6G039500 Prunus persica HOM05D016692 ORTHO05D010482 9.5e-15 85.1 167 28.7
FAN21G3878 Fragaria x ananassa HOM05D016692 ORTHO05D010482 1.6e-14 84.3 165 27.9
MD03G1049700 Malus domestica HOM05D016692 ORTHO05D010482 1.6e-14 84.3 161 29.8
ClCG03G000030 Citrullus lanatus HOM05D008517 ORTHO05D010482 2.8e-14 83.6 165 26.1
Sed0007690 Sechium edule HOM05D008517 ORTHO05D010482 4.7e-14 82.8 163 31.3
FvH4_3g40830 Fragaria vesca HOM05D016692 ORTHO05D010482 1.8e-13 80.9 165 27.3
FAN11G0742 Fragaria x ananassa HOM05D016692 ORTHO05D010482 4.0e-13 79.7 165 27.3
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 1.1e-10 71.6 156 27.6
ATR1127G036 Amborella trichopoda HOM05D005178 ORTHO05D006123 1.4e-10 71.2 167 26.9
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 9.2e-10 68.6 157 28.0
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 1.2e-09 68.2 160 27.5
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 1.2e-09 68.2 159 28.3
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 6.0e-09 65.9 163 30.1
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.0e-08 65.1 163 29.4
Nn5g26812 Nelumbo nucifera HOM05D008517 ORTHO05D010482 1.0e-08 65.1 150 30.7
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.7e-08 64.3 163 29.4
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 1.7e-08 64.3 163 28.8
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 3.0e-08 63.5 163 28.2
PSO170G1620 Papaver somniferum HOM05D008517 ORTHO05D010482 3.0e-08 63.5 211 26.1
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 3.9e-08 63.2 163 27.6
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 3.9e-08 63.2 163 28.8
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 3.9e-08 63.2 163 27.6
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 5.1e-08 62.8 163 28.8
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.1e-08 62.8 163 27.6
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 6.6e-08 62.4 163 26.4
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 6.6e-08 62.4 166 30.7
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 8.6e-08 62.0 165 27.9
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 1.1e-07 61.6 163 27.0
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.1e-07 61.6 159 25.8
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.5e-07 60.5 153 25.5
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 2.5e-07 60.5 158 26.6
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 2.5e-07 60.5 165 29.7
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 2.5e-07 60.5 164 24.4
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 4.3e-07 59.7 165 25.5
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 4.3e-07 59.7 165 29.1
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 4.3e-07 59.7 165 29.1
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 4.3e-07 59.7 165 29.1
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.3e-07 59.7 163 25.2
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 5.6e-07 59.3 165 29.1
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 5.6e-07 59.3 159 24.5
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 5.6e-07 59.3 159 24.5
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 7.3e-07 58.9 159 25.2
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.6e-06 57.8 155 27.1
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 2.8e-06 57.0 134 26.1
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 8.1e-06 55.5 163 26.4
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 8.1e-06 55.5 163 27.0
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 8.1e-06 55.5 116 26.7


User provided reference genes

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