Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 2.0e-109 399.1 192 100.0
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.4e-86 323.2 195 83.1
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.5e-77 291.6 190 80.5
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 4.6e-74 281.6 190 78.4
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.9e-67 259.6 192 71.4
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.0e-65 253.8 166 78.9
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.9e-65 251.9 170 75.9
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 5.1e-65 251.5 182 73.1
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 1.9e-64 249.6 161 78.3
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.9e-64 249.6 198 67.7
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.9e-64 249.6 198 67.7
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 4.3e-64 248.4 170 75.3
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 4.3e-64 248.4 161 77.6
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 5.7e-64 248.1 166 76.5
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 4.8e-63 245.0 173 73.4
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 6.3e-63 244.6 166 74.7
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.1e-62 243.8 157 79.0
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.8e-62 243.0 168 73.8
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-61 240.0 167 73.7
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 2.0e-61 239.6 167 73.7
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 2.0e-61 239.6 167 73.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 2.6e-61 239.2 199 63.8
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 4.5e-61 238.4 184 67.9
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 5.9e-61 238.0 174 72.4
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.0e-60 237.3 168 70.8
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 2.2e-60 236.1 187 67.9
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 3.8e-60 235.3 174 69.5
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 1.1e-59 233.8 177 65.5
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 2.5e-59 232.6 176 68.8
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 2.5e-59 232.6 169 71.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 4.2e-59 231.9 168 72.0
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 7.2e-59 231.1 169 72.2
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.4e-59 230.7 188 64.9
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 9.4e-59 230.7 173 68.2
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 3.6e-58 228.8 215 59.5
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 4.6e-58 228.4 174 70.1
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 4.6e-58 228.4 166 71.7
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.8e-57 226.5 165 70.3
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.8e-57 226.5 155 74.2
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 2.3e-57 226.1 215 60.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 2.3e-57 226.1 182 64.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 3.0e-57 225.7 163 70.6
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-57 225.3 211 59.7
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 5.1e-57 224.9 142 78.9
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 5.1e-57 224.9 175 65.7
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 6.7e-57 224.6 149 73.8
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 8.8e-57 224.2 163 69.3
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 8.8e-57 224.2 166 69.9
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 1.9e-56 223.0 170 67.6
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 4.3e-56 221.9 162 72.2
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 7.4e-56 221.1 167 67.1
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 9.7e-56 220.7 161 68.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 9.7e-56 220.7 167 68.3
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 9.7e-56 220.7 169 68.0
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.7e-55 219.9 190 62.6
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.2e-55 219.5 166 69.9
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 2.2e-55 219.5 170 68.2
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 3.7e-55 218.8 181 65.2
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 6.3e-55 218.0 181 65.2
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 6.3e-55 218.0 181 65.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.1e-54 217.2 184 63.0
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.4e-54 216.9 188 61.7
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 1.4e-54 216.9 172 65.1
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.4e-54 216.9 167 65.9
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.4e-54 216.9 169 66.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 6.9e-54 214.5 205 57.6
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 3.4e-53 212.2 210 56.2
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 4.5e-53 211.8 133 78.2
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.9e-53 211.5 169 65.1
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 5.9e-53 211.5 170 63.5
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 5.9e-53 211.5 160 66.9
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 7.7e-53 211.1 166 65.7
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.0e-52 210.7 154 68.8
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 3.8e-52 208.8 167 64.7
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 3.8e-52 208.8 164 65.2
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 8.5e-52 207.6 176 60.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 8.5e-52 207.6 176 60.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 8.5e-52 207.6 176 60.8
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 1.1e-51 207.2 143 72.7
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 1.4e-51 206.8 177 61.0
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.4e-51 206.8 184 59.2
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.4e-51 206.8 167 66.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.9e-51 206.5 164 63.4
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 1.9e-51 206.5 176 60.8
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.5e-51 206.1 222 52.3
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.5e-51 206.1 164 62.8
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.5e-51 206.1 164 62.8
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 3.2e-51 205.7 176 60.2
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 3.2e-51 205.7 182 61.0
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 4.2e-51 205.3 179 61.5
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 4.2e-51 205.3 166 63.3
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 5.5e-51 204.9 187 60.4
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.5e-51 204.9 134 76.1
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 5.5e-51 204.9 194 58.2
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 9.4e-51 204.1 195 57.4
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.2e-50 203.8 162 67.3
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 1.4e-49 200.3 184 58.7
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 2.3e-49 199.5 186 58.6
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 6.7e-49 198.0 159 66.0
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 1.1e-48 197.2 158 64.6
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.0e-48 196.4 157 65.6
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 5.7e-48 194.9 132 72.7
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 7.4e-48 194.5 132 72.0
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 7.4e-48 194.5 132 72.0
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 7.4e-48 194.5 133 73.7
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 7.4e-48 194.5 190 55.3
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 1.3e-47 193.7 132 72.7
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 1.3e-47 193.7 124 75.8
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 7.0e-46 188.0 156 62.2
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.4e-45 185.7 178 60.1
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 1.0e-44 184.1 128 71.1
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.7e-44 183.3 165 61.8
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.9e-41 172.2 129 65.1
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 8.8e-41 171.0 144 66.7
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.8e-39 166.0 145 57.2
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.8e-39 165.2 153 54.9
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 4.8e-39 165.2 153 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 6.3e-39 164.9 127 62.2
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 1.1e-38 164.1 167 50.3
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.8e-38 163.3 88 93.2
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.0e-36 157.5 149 53.7
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 4.1e-30 135.6 80 83.8
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.2e-29 134.0 78 85.9
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.8e-28 129.0 137 54.0
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 5.0e-28 128.6 110 64.5
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.8e-22 110.2 120 51.7
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 2.4e-22 109.8 62 79.0
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 4.5e-21 105.5 179 38.0
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 2.1e-18 96.7 64 65.6
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.8e-17 93.6 49 87.8
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 2.0e-16 90.1 120 44.2
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 3.4e-16 89.4 69 71.0
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.7e-15 85.9 56 66.1
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 4.1e-14 82.4 141 36.9
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 9.2e-14 81.3 63 69.8
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 3.5e-13 79.3 92 46.7
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.3e-12 77.4 55 67.3
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 2.6e-08 63.2 44 70.5


User provided reference genes

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