Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 5.5e-110 401.0 201 100.0
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.5e-72 275.0 195 71.3
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 8.5e-71 270.8 199 71.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.5e-70 269.2 189 70.9
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.6e-69 266.5 171 77.2
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 3.6e-69 265.4 197 70.1
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 8.8e-68 260.8 171 76.0
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.2e-67 260.4 156 78.2
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.5e-67 260.0 169 75.1
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.4e-67 258.8 209 64.1
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.4e-67 258.8 195 68.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.7e-67 258.1 199 66.8
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 7.5e-67 257.7 182 71.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.8e-67 257.3 168 75.6
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.8e-66 255.8 164 76.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.8e-66 255.8 156 76.9
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.1e-65 253.8 168 74.4
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.8e-65 253.1 166 73.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.0e-64 249.6 195 65.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.7e-64 249.2 167 73.7
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.7e-64 249.2 153 79.1
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.5e-64 248.8 186 67.2
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.5e-64 248.4 178 70.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 4.5e-64 248.4 164 73.2
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 2.3e-63 246.1 167 72.5
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 2.3e-63 246.1 167 72.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 2.3e-63 246.1 177 69.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.9e-63 245.7 169 71.0
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 3.8e-63 245.4 155 75.5
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 5.0e-63 245.0 155 74.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 5.0e-63 245.0 151 76.8
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 6.6e-63 244.6 197 63.5
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.1e-62 243.8 166 71.1
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.9e-62 243.0 166 72.9
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 2.5e-62 242.7 173 69.9
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.5e-62 241.5 188 64.4
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 9.5e-62 240.7 200 61.0
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.5e-62 240.7 200 61.5
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.2e-61 240.4 175 69.7
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.6e-61 240.0 172 69.8
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.8e-61 239.2 151 74.8
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 3.6e-61 238.8 158 76.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 3.6e-61 238.8 178 69.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 6.1e-61 238.0 168 70.2
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.8e-60 236.5 192 66.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-60 236.1 166 71.7
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.3e-60 236.1 188 63.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 3.0e-60 235.7 191 63.9
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 5.2e-60 235.0 175 66.9
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 8.9e-60 234.2 167 70.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.5e-59 233.4 196 62.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 7.5e-59 231.1 174 67.2
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.3e-58 230.3 202 62.9
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 2.2e-58 229.6 163 69.9
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 2.8e-58 229.2 159 69.8
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 4.9e-58 228.4 158 70.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 6.3e-58 228.0 177 66.1
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.4e-57 226.9 203 58.1
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.2e-56 223.8 171 66.7
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.7e-56 222.6 153 69.3
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 3.5e-56 222.2 200 59.0
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.5e-56 221.9 155 71.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 1.7e-55 219.9 156 69.2
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 8.6e-55 217.6 158 69.0
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.1e-54 217.2 164 65.2
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.9e-54 216.5 166 67.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 7.3e-54 214.5 158 67.7
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.8e-53 212.6 159 70.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.8e-53 212.6 157 66.9
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 6.1e-53 211.5 165 62.4
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 8.0e-53 211.1 196 56.6
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 8.0e-53 211.1 175 61.1
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.0e-52 210.7 155 64.5
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.4e-52 210.3 249 49.0
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.2e-51 207.2 167 65.9
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.5e-51 206.8 158 64.6
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.5e-51 206.8 192 59.4
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 4.4e-51 205.3 207 53.1
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.5e-51 204.5 186 57.5
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 7.5e-51 204.5 171 62.6
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-50 203.8 114 87.7
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 8.3e-50 201.1 119 77.3
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-49 200.7 157 61.8
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.9e-49 199.9 158 68.4
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 3.2e-49 199.1 160 64.4
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 4.1e-49 198.7 151 64.9
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 5.4e-49 198.4 119 79.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 7.0e-49 198.0 156 60.9
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 9.2e-49 197.6 120 79.2
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 9.2e-49 197.6 158 63.9
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.5e-48 195.7 172 61.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 4.6e-48 195.3 157 60.5
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 6.0e-48 194.9 119 77.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 1.0e-47 194.1 165 61.8
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-47 193.7 124 73.4
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.7e-47 193.4 150 63.3
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 5.0e-47 191.8 114 81.6
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 2.5e-46 189.5 114 80.7
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 3.3e-46 189.1 112 82.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 3.3e-46 189.1 112 80.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 9.5e-46 187.6 115 77.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-45 186.8 112 81.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.8e-45 186.0 114 80.7
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 8.0e-45 184.5 121 71.1
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.1e-44 184.1 152 59.2
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-44 184.1 114 78.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.1e-44 184.1 110 80.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 2.3e-44 183.0 112 80.4
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.3e-44 183.0 154 58.4
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.3e-44 183.0 113 77.9
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 5.2e-44 181.8 167 58.1
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 8.9e-44 181.0 116 74.1
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.5e-43 180.3 162 57.4
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.5e-43 180.3 170 54.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 5.8e-43 178.3 155 59.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.7e-42 175.6 112 75.0
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 4.9e-42 175.3 147 59.9
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 4.9e-42 175.3 160 53.8
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 6.4e-42 174.9 158 55.1
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 2.7e-40 169.5 158 60.8
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 7.8e-40 167.9 131 63.4
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 2.3e-39 166.4 114 69.3
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 5.1e-39 165.2 172 50.0
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.9e-38 163.3 195 51.8
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 2.8e-37 159.5 131 57.3
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 7.5e-35 151.4 141 58.9
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.9e-33 146.7 96 74.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.4e-33 146.4 166 51.8
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.1e-32 143.3 154 51.9
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.0e-31 139.4 77 81.8
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 2.1e-29 133.3 145 49.7
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.1e-28 131.0 110 57.3
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 3.4e-27 125.9 124 57.3
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.7e-26 123.6 81 77.8
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.9e-26 122.9 157 45.9
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.9e-26 122.1 77 70.1
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.2e-25 119.4 70 82.9
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.2e-25 119.0 69 82.6
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 5.4e-25 118.6 74 79.7
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.6e-24 115.5 71 78.9
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.6e-21 107.1 122 54.9
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 4.7e-21 105.5 151 43.7
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-20 104.0 121 54.5
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 5.3e-20 102.1 135 42.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.9e-20 101.7 85 58.8
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.4e-17 93.2 62 74.2
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.3e-15 86.7 85 56.5
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 9.6e-14 81.3 55 67.3
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.1e-12 77.8 81 58.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 3.4e-11 72.8 52 65.4
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 1.3e-10 70.9 45 66.7
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.9e-10 69.7 75 46.7
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 2.9e-10 69.7 79 55.7
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.9e-10 69.7 57 57.9
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 3.8e-10 69.3 52 65.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.8e-10 69.3 44 68.2
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 4.9e-10 68.9 75 48.0
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.2e-09 65.9 47 55.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 5.4e-09 65.5 51 58.8
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 7.1e-09 65.1 57 52.6
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 1.2e-08 64.3 90 42.2
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.6e-08 63.9 41 65.9
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.1e-08 63.5 46 58.7
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 6.0e-08 62.0 64 56.2
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 2.3e-07 60.1 37 67.6
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 2.3e-07 60.1 40 67.5
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 6.7e-07 58.5 41 61.0
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 7.4e-06 55.1 98 32.7
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 9.6e-06 54.7 35 68.6


User provided reference genes

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