Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 6.5e-89 330.9 187 100.0
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 7.1e-88 327.4 186 98.9
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 8.8e-46 187.6 166 61.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 8.8e-46 187.6 174 58.6
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.6e-45 186.0 174 58.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 3.4e-45 185.7 173 59.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 5.7e-45 184.9 169 59.8
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.5e-45 184.5 163 63.2
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 9.8e-45 184.1 174 58.0
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.2e-44 183.0 170 60.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 4.9e-44 181.8 187 56.7
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 8.3e-44 181.0 174 61.5
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.1e-43 180.6 157 64.3
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.8e-43 179.9 169 59.8
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.1e-43 179.1 167 61.1
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 7.0e-43 177.9 174 60.3
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 2.7e-42 176.0 180 56.1
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 2.7e-42 176.0 168 56.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.5e-42 175.6 165 60.6
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 4.5e-42 175.3 168 56.5
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 4.5e-42 175.3 170 58.8
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.9e-42 174.9 163 62.6
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 1.7e-41 173.3 170 58.2
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 2.3e-41 172.9 173 54.9
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.3e-41 172.9 181 53.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 2.3e-41 172.9 179 55.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 5.0e-41 171.8 169 55.0
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 5.0e-41 171.8 165 58.2
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.5e-40 170.2 166 55.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 2.5e-40 169.5 187 52.9
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 2.5e-40 169.5 169 54.4
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 4.3e-40 168.7 169 53.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 7.2e-40 167.9 173 53.8
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 7.2e-40 167.9 173 53.8
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 7.2e-40 167.9 173 53.8
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.2e-39 167.2 173 54.9
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.6e-39 166.8 187 52.4
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.4e-38 163.7 180 53.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.4e-38 163.7 167 55.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 8.9e-38 161.0 169 53.8
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 8.9e-38 161.0 182 50.5
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 8.9e-38 161.0 182 50.5
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 8.9e-38 161.0 174 54.6
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.2e-37 160.6 169 53.8
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.5e-37 160.2 169 55.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 2.0e-37 159.8 159 55.3
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.4e-37 159.1 164 55.5
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 4.4e-37 158.7 159 54.7
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.5e-37 157.9 182 52.7
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 9.8e-37 157.5 173 56.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.8e-37 157.5 184 52.2
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.3e-36 157.1 189 52.4
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.2e-36 156.4 184 52.2
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.4e-36 154.8 176 52.3
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.4e-35 153.7 176 52.8
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.4e-35 153.7 165 54.5
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.8e-35 153.3 156 55.8
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.1e-35 152.1 165 53.9
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.6e-34 150.2 191 48.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.7e-34 149.4 171 50.9
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.6e-34 148.7 176 47.7
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.3e-33 147.1 165 52.7
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 3.9e-33 145.6 162 51.9
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 5.0e-33 145.2 174 51.7
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 6.6e-33 144.8 169 53.8
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.9e-32 143.3 156 51.9
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 3.3e-32 142.5 186 50.0
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.3e-32 142.5 174 48.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.3e-32 142.5 185 50.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 7.3e-32 141.4 160 52.5
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 7.3e-32 141.4 171 51.5
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 9.5e-32 141.0 182 47.3
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.6e-31 140.2 171 49.1
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.6e-31 140.2 181 49.2
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 2.1e-31 139.8 175 49.1
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.1e-31 139.8 174 47.1
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.1e-31 139.8 174 47.1
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 4.7e-31 138.7 230 41.7
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.8e-30 136.7 182 46.2
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.8e-30 136.7 155 54.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.3e-30 136.3 211 42.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.0e-29 133.3 185 47.0
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.6e-29 132.9 161 52.8
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.4e-29 132.5 160 49.4
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.3e-28 130.6 166 48.2
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.9e-28 128.6 161 49.1
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-27 127.1 175 44.0
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.9e-27 126.7 165 47.3
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.4e-27 126.3 151 52.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 9.2e-27 124.4 154 49.4
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 2.0e-26 123.2 219 38.4
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 6.0e-26 121.7 173 48.6
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.3e-25 120.6 187 41.2
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.3e-25 119.8 182 47.3
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 3.9e-25 119.0 166 48.8
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 5.0e-25 118.6 151 47.7
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-25 118.6 154 50.0
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-25 118.6 154 50.0
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 5.0e-25 118.6 117 54.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 6.6e-25 118.2 123 58.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 6.6e-25 118.2 167 41.9
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-24 116.7 171 43.3
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.5e-24 116.3 167 47.3
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 9.5e-24 114.4 174 44.3
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.6e-23 112.5 106 57.5
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 4.7e-23 112.1 176 42.6
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 8.1e-23 111.3 182 45.6
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.4e-22 110.5 177 45.8
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.1e-22 109.4 187 42.8
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 5.2e-22 108.6 181 44.2
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 6.8e-22 108.2 193 42.5
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 6.8e-22 108.2 104 59.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.8e-22 108.2 173 42.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.6e-21 106.3 151 46.4
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.4e-21 105.5 167 41.9
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 7.8e-18 94.7 103 56.3
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 2.3e-17 93.2 118 48.3
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 3.0e-17 92.8 176 42.6
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 3.0e-17 92.8 89 62.9
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.9e-17 92.4 170 44.7
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.9e-16 90.1 166 41.0
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.9e-16 90.1 110 46.4
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.2e-15 87.4 149 37.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.1e-15 86.7 164 39.6
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 2.1e-15 86.7 178 41.0
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-14 83.6 103 55.3
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.8e-14 83.6 184 36.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 4.9e-12 75.5 188 36.2
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 6.4e-12 75.1 72 47.2
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.1e-11 74.3 165 41.8
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.1e-11 74.3 165 41.8
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 5.4e-11 72.0 72 59.7
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 5.4e-11 72.0 72 59.7
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 2.1e-10 70.1 103 49.5
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 6.0e-10 68.6 104 48.1
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-09 67.4 150 34.7
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-09 67.4 150 34.7
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.7e-09 67.0 125 44.0
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-08 63.5 57 63.2
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-07 60.8 121 43.0
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.6e-07 60.5 64 57.8
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 2.8e-07 59.7 166 32.5
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 3.6e-07 59.3 103 47.6
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 8.1e-07 58.2 47 61.7
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 1.1e-06 57.8 57 61.4
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.1e-06 57.8 165 30.9
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-06 57.0 162 39.5
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.0e-06 55.8 74 51.4
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 4.0e-06 55.8 69 44.9


User provided reference genes

Program Settings