Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 8.4e-73 276.9 142 100.0
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 1.3e-70 269.6 142 97.2
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 9.6e-69 263.5 140 95.7
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 1.3e-68 263.1 138 97.1
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 5.3e-35 151.4 138 55.8
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 7.0e-35 151.0 113 67.3
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 7.0e-35 151.0 134 59.0
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 1.6e-34 149.8 135 56.3
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 3.2e-32 142.1 135 54.8
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 1.6e-31 139.8 123 58.5
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 8.0e-31 137.5 138 52.2
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 1.8e-30 136.3 95 70.5
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 3.0e-30 135.6 134 53.0
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 5.2e-30 134.8 134 51.5
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.6e-29 132.5 122 52.5
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 5.7e-29 131.3 116 57.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 9.7e-29 130.6 141 50.4
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 1.3e-28 130.2 131 51.9
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 1.3e-28 130.2 111 52.3
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.2e-28 129.4 94 68.1
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 2.8e-28 129.0 95 66.3
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 8.2e-28 127.5 87 70.1
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 1.1e-27 127.1 124 54.0
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 1.4e-27 126.7 140 50.0
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 1.4e-27 126.7 126 52.4
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.8e-27 126.3 118 52.5
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 3.1e-27 125.6 95 64.2
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 3.1e-27 125.6 95 64.2
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 4.5e-26 121.7 127 49.6
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 5.9e-26 121.3 104 59.6
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 5.9e-26 121.3 134 49.3
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 1.3e-25 120.2 126 50.8
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.3e-25 120.2 82 68.3
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 2.2e-25 119.4 112 55.4
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 2.9e-25 119.0 92 62.0
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 2.9e-25 119.0 92 62.0
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 3.8e-25 118.6 109 56.0
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 1.5e-24 116.7 113 53.1
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.9e-24 116.3 93 57.0
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 5.5e-24 114.8 125 46.4
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 9.4e-24 114.0 123 50.4
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 1.2e-23 113.6 111 52.3
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 3.6e-23 112.1 106 50.0
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 4.7e-23 111.7 104 51.9
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 8.0e-23 110.9 100 51.0
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 8.0e-23 110.9 136 47.1
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.0e-22 110.5 134 45.5
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 1.4e-22 110.2 134 45.5
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 2.3e-22 109.4 104 48.1
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 4.0e-22 108.6 88 54.5
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 3.4e-21 105.5 123 43.9
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 6.3e-20 101.3 66 68.2
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 8.3e-20 100.9 99 50.5
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.1e-19 100.5 128 41.4
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.4e-19 99.4 108 46.3
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 4.1e-19 98.6 69 66.7
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 5.4e-19 98.2 71 64.8
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 5.4e-19 98.2 93 50.5
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 2.7e-18 95.9 86 53.5
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 3.5e-18 95.5 71 63.4
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 3.5e-18 95.5 136 40.4
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 5.9e-18 94.7 62 67.7
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 5.9e-18 94.7 57 71.9
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 7.7e-18 94.4 69 62.3
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 1.0e-17 94.0 59 71.2
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 1.3e-17 93.6 57 70.2
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 3.8e-17 92.0 59 69.5
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.0e-17 91.7 60 65.0
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 6.5e-17 91.3 69 60.9
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 4.2e-16 88.6 57 64.9
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 9.5e-16 87.4 79 49.4
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.2e-15 87.0 84 50.0
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 1.6e-15 86.7 85 48.2
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 3.6e-15 85.5 57 66.7
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 4.7e-15 85.1 188 33.5
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 6.1e-15 84.7 102 39.2
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 1.8e-14 83.2 83 47.0
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 2.3e-14 82.8 90 51.1
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 3.0e-14 82.4 127 37.0
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 3.7e-12 75.5 74 45.9
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 6.3e-12 74.7 94 45.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 2.0e-10 69.7 38 78.9
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.3e-09 67.0 51 62.7
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 2.9e-09 65.9 41 68.3
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 2.9e-09 65.9 78 38.5
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 3.6e-07 58.9 49 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3283 Anthoceros agrestis HOM05D007718 ORTHO05D009752 1.4e-06 57.0 50 48.0
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 2.3e-06 56.2 84 39.3


User provided reference genes

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