Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 1.9e-98 362.5 177 100.0
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 5.1e-51 204.9 192 58.3
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 1.6e-44 183.3 193 53.4
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 3.6e-41 172.2 177 56.5
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 2.9e-38 162.5 196 50.0
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.4e-37 159.5 189 50.8
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 2.4e-37 159.5 189 50.8
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 9.3e-37 157.5 140 62.1
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 9.3e-37 157.5 140 62.1
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 9.3e-37 157.5 140 62.1
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 9.3e-37 157.5 140 62.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 4.3e-34 148.7 128 60.2
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 9.3e-29 131.0 129 56.6
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 3.7e-25 119.0 175 45.7
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 1.0e-22 110.9 79 68.4
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 1.3e-22 110.5 78 67.9
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 8.4e-22 107.8 78 64.1
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 1.6e-20 103.6 82 64.6
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 4.6e-20 102.1 78 64.1
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 7.9e-20 101.3 78 64.1
Potri.002G073450 Populus trichocarpa HOM05D000963 ORTHO05D005131 1.3e-19 100.5 136 44.9
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 2.3e-19 99.8 78 64.1
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 8.7e-19 97.8 117 53.0
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 1.9e-18 96.7 97 58.8
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 7.4e-18 94.7 75 62.7
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.3e-17 94.0 120 46.7
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 2.1e-17 93.2 60 76.7
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 2.1e-17 93.2 60 76.7
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 6.2e-17 91.7 76 57.9
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 6.2e-17 91.7 59 74.6
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 6.2e-17 91.7 59 76.3
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 1.1e-16 90.9 100 56.0
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 6.9e-16 88.2 66 65.2
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 9.0e-16 87.8 59 72.9
Lsat_1_v5_gn_4_145420 Lactuca sativa HOM05D000963 ORTHO05D005131 1.2e-15 87.4 97 56.7
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 4.5e-15 85.5 116 49.1
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 7.6e-15 84.7 87 56.3
arahy.Tifrunner.gnm1.ann1.ZFFY2U Arachis hypogaea HOM05D000963 ORTHO05D005131 2.9e-14 82.8 68 61.8
vmacro09302 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 8.4e-14 81.3 58 67.2
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 1.1e-13 80.9 57 70.2
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 1.9e-13 80.1 59 69.5
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.2e-13 79.3 98 52.0
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 4.2e-13 79.0 94 52.1
CDE02G2642 Ceratophyllum demersum HOM05D000963 ORTHO05D005131 7.2e-13 78.2 91 50.5
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.2e-12 77.4 122 43.4
Gohir.D11G280866 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.6e-12 77.0 56 64.3
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 1.6e-12 77.0 56 64.3
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 2.1e-12 76.6 56 64.3
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 4.6e-12 75.5 158 38.6
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 4.6e-12 75.5 50 74.0
Gorai.007G303200 Gossypium raimondii HOM05D000963 ORTHO05D005131 6.1e-12 75.1 56 62.5
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 7.9e-12 74.7 53 69.8
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.0e-11 74.3 126 40.5
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 3.9e-11 72.4 55 63.6
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 6.7e-11 71.6 83 49.4
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 8.7e-11 71.2 68 57.4
Migut.D01399 Erythranthe guttata HOM05D000963 ORTHO05D011117 1.1e-10 70.9 137 40.1
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 1.5e-10 70.5 58 65.5
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.5e-10 70.5 58 65.5
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 1.5e-10 70.5 58 65.5
Gohir.D02G117532 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-10 70.5 58 65.5
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-10 70.5 58 65.5
SGA_v2.0_scaffold126G33874 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-10 70.5 49 71.4
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.5e-10 70.5 47 74.5
Aqoxy4G01626 Aquilegia oxysepala HOM05D003517 ORTHO05D005131 1.9e-10 70.1 48 72.9
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 1.9e-10 70.1 52 65.4
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.9e-10 70.1 91 52.7
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.3e-10 69.3 56 62.5
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 3.3e-10 69.3 47 74.5
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 3.3e-10 69.3 47 74.5
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.3e-10 68.9 63 55.6
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.3e-10 68.9 63 55.6
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.3e-10 68.9 63 55.6
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.3e-10 68.9 63 55.6
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.3e-10 68.9 63 55.6
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 5.7e-10 68.6 49 71.4
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.7e-10 68.6 45 75.6
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 5.7e-10 68.6 45 75.6
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 1.3e-09 67.4 53 58.5
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 1.3e-09 67.4 98 44.9
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 1.6e-09 67.0 97 43.3
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 2.8e-09 66.2 47 68.1
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 2.8e-09 66.2 73 53.4
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.7e-09 65.9 47 70.2
Oeu048363.1 Olea europaea HOM05D000963 ORTHO05D018542 4.1e-08 62.4 62 53.2
Solyc01g017050.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 4.1e-08 62.4 43 74.4
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 4.1e-08 62.4 58 60.3
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.0e-07 60.1 55 58.2
Sc22g0004610 Simmondsia chinensis HOM05D000963 ORTHO05D011117 1.7e-06 57.0 82 46.3


User provided reference genes

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