Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 3.9e-193 677.9 341 100.0
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 3.7e-135 485.3 325 74.8
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 1.9e-134 483.0 340 72.1
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 8.6e-132 474.2 302 78.5
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 2.8e-130 469.2 332 70.8
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 2.3e-129 466.1 330 71.8
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 6.8e-129 464.5 302 75.8
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 3.4e-128 462.2 313 72.5
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 9.9e-128 460.7 285 78.6
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.9e-127 459.1 329 69.3
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 6.4e-127 458.0 337 68.0
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 1.4e-126 456.8 300 72.3
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 7.1e-126 454.5 309 72.2
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 6.0e-125 451.4 328 68.9
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 1.0e-124 450.7 322 68.6
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.5e-123 446.8 329 67.8
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 1.9e-123 446.4 345 67.0
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 2.8e-122 442.6 332 66.6
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 8.1e-122 441.0 312 70.8
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 1.1e-121 440.7 302 67.9
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 3.1e-121 439.1 305 71.5
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 3.1e-121 439.1 316 67.1
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 6.8e-121 438.0 331 67.7
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 4.4e-120 435.3 326 66.0
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 1.3e-119 433.7 301 69.4
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.7e-119 433.3 295 67.8
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 2.2e-119 433.0 297 70.4
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 4.9e-119 431.8 301 68.8
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 2.7e-117 426.0 305 66.6
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 3.5e-117 425.6 320 67.5
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 4.6e-117 425.2 322 67.4
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 7.8e-117 424.5 326 65.0
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 5.1e-116 421.8 314 68.2
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 5.1e-116 421.8 295 65.8
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 4.3e-115 418.7 308 66.9
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 2.8e-114 416.0 313 64.5
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.1e-113 414.1 329 64.4
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 1.1e-113 414.1 332 62.7
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.4e-113 412.9 307 65.5
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 5.3e-113 411.8 289 69.2
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 6.9e-113 411.4 306 63.4
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 5.8e-112 408.3 314 65.3
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 3.8e-111 405.6 311 63.3
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 4.9e-111 405.2 270 71.5
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 6.4e-111 404.8 304 65.5
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.4e-110 403.7 313 63.3
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 9.3e-110 401.0 300 64.3
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.3e-110 401.0 275 71.3
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 9.3e-110 401.0 316 63.0
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 1.2e-109 400.6 319 61.8
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 2.7e-109 399.4 305 64.3
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 3.5e-109 399.1 301 64.8
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 3.5e-109 399.1 313 62.9
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 3.5e-109 399.1 298 63.4
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.0e-108 397.5 313 61.7
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.0e-108 397.5 360 58.1
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.3e-108 397.1 289 68.5
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 3.0e-108 396.0 313 61.7
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 5.1e-108 395.2 300 63.7
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 5.1e-108 395.2 324 59.6
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.5e-107 392.9 290 64.1
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 9.6e-107 391.0 313 61.0
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.8e-105 386.7 311 61.7
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.2e-104 384.0 286 68.5
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 5.8e-104 381.7 311 60.8
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 2.2e-103 379.8 297 61.6
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 2.9e-103 379.4 303 61.7
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.1e-102 374.8 281 66.9
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.9e-100 369.0 296 64.9
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.3e-98 364.0 325 58.2
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.3e-98 364.0 331 55.3
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.8e-98 362.8 304 58.2
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-97 360.1 330 60.0
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 1.0e-95 354.4 308 58.4
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 4.2e-94 349.0 325 52.6
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.2e-93 347.4 302 60.9
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 1.3e-87 327.4 324 54.3
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.5e-83 313.9 205 74.6
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 5.3e-81 305.4 214 70.6
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 8.5e-79 298.1 347 50.1
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 1.1e-78 297.7 208 68.8
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.9e-78 297.0 207 70.0
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 2.3e-76 290.0 272 58.8
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.1e-75 287.7 322 44.4
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 2.4e-73 280.0 207 62.3
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.1e-73 279.3 289 55.0
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 2.6e-72 276.6 212 62.3
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.6e-69 267.3 244 57.8
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 2.6e-59 233.4 295 46.8
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 3.3e-59 233.0 195 62.6
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 8.2e-58 228.4 331 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 5.9e-56 222.2 308 40.3
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 7.2e-54 215.3 123 82.9
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 1.8e-52 210.7 293 43.0
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.7e-47 194.1 215 47.0
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 7.0e-41 172.2 126 62.7
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 2.0e-40 170.6 148 56.1
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 7.8e-40 168.7 97 79.4
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 3.3e-38 163.3 112 74.1
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 2.1e-37 160.6 298 32.2
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.3e-36 157.1 92 77.2
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 4.9e-34 149.4 110 63.6
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.0e-33 145.6 124 63.7
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 3.5e-32 143.3 80 75.0
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.0e-27 127.5 80 75.0
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.4e-27 126.7 91 71.4
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 2.2e-26 124.0 182 43.4
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.9e-26 123.6 91 70.3
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 3.5e-24 116.7 71 74.6
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.7e-23 114.4 295 27.8
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 3.0e-23 113.6 162 33.3
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.4e-17 94.0 66 62.1
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.7e-13 79.7 156 36.5
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.7e-13 79.7 156 36.5
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.3e-12 77.4 156 35.9
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 3.1e-12 77.0 136 36.8
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.7e-10 71.2 49 71.4
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 2.3e-07 60.8 45 64.4
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 3.0e-07 60.5 223 26.0
MBI14_g30460_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D014525 6.6e-07 59.3 37 81.1


User provided reference genes

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