Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 3.5e-183 644.8 328 100.0
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 9.8e-125 450.7 350 67.7
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.4e-108 394.4 353 61.2
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 4.6e-106 388.7 342 62.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.3e-105 387.1 350 61.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.8e-94 350.1 399 51.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-91 340.9 332 58.4
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 4.2e-91 339.0 332 58.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 5.6e-88 328.6 362 53.9
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.6e-87 327.0 382 51.6
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-87 326.2 301 59.8
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 4.8e-87 325.5 355 53.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 5.3e-86 322.0 346 53.8
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.0e-85 320.1 331 55.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.7e-84 317.0 345 53.3
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 2.2e-84 316.6 363 52.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 6.4e-84 315.1 366 52.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.4e-83 313.2 371 51.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.4e-83 313.2 376 49.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.6e-82 310.5 331 55.9
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.7e-82 309.7 352 51.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.0e-81 307.8 331 55.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.5e-80 303.1 342 52.9
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.4e-80 301.6 363 49.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.4e-80 301.6 362 50.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 1.3e-79 300.8 361 50.4
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.8e-78 297.0 344 52.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.6e-77 293.1 361 47.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-77 293.1 329 51.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.6e-77 293.1 329 51.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 3.4e-77 292.7 325 52.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.7e-76 290.4 367 48.8
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.9e-76 289.7 366 49.2
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.5e-75 286.6 357 46.2
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 7.1e-75 285.0 349 50.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.3e-75 284.6 340 51.2
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.1e-74 283.5 362 46.7
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.5e-74 282.7 380 47.6
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.7e-73 278.1 347 49.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-72 277.7 330 52.1
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.3e-72 276.2 360 48.3
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.3e-72 275.8 329 49.5
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.7e-72 275.4 364 46.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 9.6e-72 274.6 347 48.7
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.6e-72 274.6 330 51.5
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 9.6e-72 274.6 334 50.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.8e-71 273.1 330 51.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.7e-71 272.7 330 51.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 4.8e-71 272.3 350 48.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.1e-70 269.2 341 49.0
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.5e-69 265.8 347 47.6
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.0e-68 264.6 347 48.7
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 8.5e-68 261.5 397 45.3
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.5e-67 260.0 337 48.7
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 2.1e-66 256.9 347 46.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.7e-66 256.5 329 45.9
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 6.1e-66 255.4 334 46.1
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-65 254.2 369 43.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 6.7e-65 251.9 399 44.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.5e-64 250.0 348 46.0
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 6.9e-62 241.9 335 43.9
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.4e-61 239.6 348 46.0
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.0e-60 235.7 286 49.0
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.0e-60 235.7 286 49.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.0e-60 235.7 329 44.1
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.1e-59 234.6 324 45.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-58 231.1 334 44.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-58 231.1 331 43.8
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-58 230.7 366 41.3
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.1e-58 230.3 319 43.6
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 1.0e-57 228.0 341 44.3
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-57 228.0 331 43.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.6e-56 223.4 343 42.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.3e-55 218.8 361 41.8
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.1e-54 216.1 364 40.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.0e-53 213.8 348 39.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.4e-53 213.0 327 40.4
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.4e-53 213.0 330 42.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 7.7e-53 211.8 323 41.2
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.3e-52 211.1 322 41.0
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.7e-52 210.7 329 43.2
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 5.0e-52 209.1 386 39.9
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.5e-52 208.8 331 42.6
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.1e-51 208.0 348 41.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.2e-51 206.1 357 38.4
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.5e-51 205.7 334 44.9
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-50 204.1 335 39.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.1e-50 203.8 348 41.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.7e-50 202.6 330 41.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.8e-49 200.7 329 40.7
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 5.7e-48 195.7 323 39.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 9.7e-48 194.9 361 39.3
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.2e-47 193.7 324 39.2
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.8e-47 192.6 332 38.9
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 2.4e-46 190.3 330 40.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.0e-46 188.7 367 39.5
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.6e-45 186.8 333 40.5
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 5.9e-45 185.7 329 39.2
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.9e-45 185.7 324 38.6
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 7.7e-45 185.3 329 39.2
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 7.7e-45 185.3 329 39.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.7e-44 184.1 369 37.4
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.2e-44 183.7 376 37.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.5e-43 181.0 324 38.9
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.9e-43 180.6 325 40.6
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.9e-43 180.6 326 40.2
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 7.2e-43 178.7 332 38.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.2e-42 177.9 127 68.5
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 2.7e-42 176.8 328 39.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.7e-42 176.8 337 37.7
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.3e-41 173.7 332 38.3
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-40 171.0 324 38.0
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.0e-40 170.6 366 36.6
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 9.7e-40 168.3 331 36.3
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 8.2e-39 165.2 321 38.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.8e-38 164.1 322 37.9
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 2.4e-38 163.7 215 47.4
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.1e-38 163.3 335 36.4
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.1e-38 163.3 335 36.4
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 4.1e-38 162.9 309 37.9
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.1e-38 161.8 309 36.6
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-37 161.0 348 35.9
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 3.5e-37 159.8 322 37.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-36 156.8 324 37.3
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.5e-36 155.2 462 31.2
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 9.4e-35 151.8 445 30.6
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-34 151.4 158 51.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-33 147.9 155 51.6
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-33 147.9 155 51.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.8e-33 147.5 132 59.1
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.0e-32 144.1 227 40.5
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 2.0e-32 144.1 133 55.6
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 4.4e-32 142.9 331 34.1
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 4.4e-32 142.9 331 34.1
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.4e-32 142.9 359 32.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.7e-32 142.5 226 39.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-31 140.6 338 34.9
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.4e-30 137.9 135 52.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.8e-30 137.5 247 37.2
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.2e-29 134.8 324 35.2
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.3e-28 131.3 106 64.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.9e-28 130.2 176 46.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 3.8e-28 129.8 323 33.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 3.8e-28 129.8 323 33.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 3.8e-28 129.8 323 33.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 1.1e-27 128.3 122 53.3
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.9e-27 127.5 328 32.9
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.5e-27 125.2 102 63.7
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.5e-27 125.2 102 63.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 1.8e-25 120.9 108 58.3
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.0e-25 119.8 161 41.6
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 2.6e-24 117.1 111 55.0
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.6e-24 117.1 139 48.2
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.6e-24 117.1 323 29.7
Sabra16G0296100 Salix brachista HOM05D003874 ORTHO05D004545 5.7e-24 115.9 98 55.1
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 9.8e-24 115.2 73 75.3
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.7e-23 114.4 112 49.1
Sabra16G0294500 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-23 113.6 98 55.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 6.3e-23 112.5 236 38.1
Sabra16G0293600 Salix brachista HOM05D003874 ORTHO05D004545 6.3e-23 112.5 98 55.1
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.4e-22 110.5 177 40.1
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.4e-22 110.5 73 71.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 5.4e-22 109.4 110 54.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.2e-21 108.2 324 29.6
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 2.7e-21 107.1 114 52.6
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.3e-20 104.0 146 46.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.6e-20 102.1 275 32.4
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.1e-19 101.7 133 37.6
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 2.6e-16 90.5 85 48.2
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 4.9e-15 86.3 138 34.1
Sabra16G0293500 Salix brachista HOM05D003874 ORTHO05D004545 1.4e-14 84.7 96 46.9
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 3.1e-09 67.0 43 72.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.8e-08 62.8 90 37.8
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 8.3e-07 58.9 106 30.2
SEGI_24660 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.3e-07 58.9 72 38.9
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.9e-06 57.8 79 41.8
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 2.4e-06 57.4 172 31.4
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 2.4e-06 57.4 171 29.8
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 3.2e-06 57.0 85 36.5
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 3.2e-06 57.0 64 42.2
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 3.2e-06 57.0 86 45.3
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 4.1e-06 56.6 83 38.6
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 4.1e-06 56.6 130 30.8
unitig_37.g13077 Utricularia gibba HOM05D003874 ORTHO05D030560 4.1e-06 56.6 112 36.6


User provided reference genes

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