Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G201524 Manihot esculenta HOM05D000003 ORTHO05D012297 9.9e-67 256.5 120 100.0
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.7e-16 88.2 119 35.3
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 2.3e-15 85.9 119 34.5
Potri.004G015067 Populus trichocarpa HOM05D000003 ORTHO05D000004 2.8e-13 79.0 120 35.8
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-11 73.6 123 39.0
CANSAT54G1809 Cannabis sativa HOM05D000003 ORTHO05D000004 4.5e-11 71.6 118 35.6
Atru.chr8.899 Acer truncatum HOM05D000003 ORTHO05D000004 5.9e-11 71.2 123 35.8
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 5.9e-11 71.2 125 33.6
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-11 70.9 127 37.0
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-10 69.7 122 33.6
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-10 68.9 122 37.7
TPR.G32297 Trifolium pratense HOM05D000003 ORTHO05D000004 3.8e-10 68.6 119 31.1
BcaB01g02268 Brassica carinata HOM05D000003 ORTHO05D000411 5.0e-10 68.2 128 34.4
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-10 68.2 123 33.3
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-10 67.4 117 35.9
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.1e-09 67.0 102 34.3
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-09 66.6 122 34.4
Atru.chr6.65 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-09 66.6 122 32.8
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 1.9e-09 66.2 125 31.2
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-09 65.5 123 33.3
RhsimUnG0226300 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.3e-09 65.5 129 34.9
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-09 64.7 123 33.3
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 5.5e-09 64.7 126 31.7
Potri.001G266504 Populus trichocarpa HOM05D000003 ORTHO05D000004 5.5e-09 64.7 92 34.8
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-09 64.3 121 32.2
CANSAT54G1058 Cannabis sativa HOM05D000003 ORTHO05D000004 7.2e-09 64.3 122 30.3
Atru.chr1.2765 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-09 63.9 124 31.5
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-09 63.9 120 35.0
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-09 63.9 104 36.5
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 9.5e-09 63.9 97 34.0
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-08 63.5 123 35.0
CANSAT54G0092 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-08 63.2 120 32.5
Atru.chr2.2049 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-08 62.8 122 32.8
CANSAT11G0439 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-08 62.8 95 35.8
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 121 33.1
Atru.chr2.2490 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 122 32.8
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 122 32.0
Atru.chr4.1426 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-08 62.4 121 34.7
CANSAT56G2527 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-08 62.0 128 32.0
Atru.chr12.2026 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-08 61.6 123 35.8
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-08 61.6 117 35.0
CANSAT54G2929 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-08 61.6 117 35.0
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 6.1e-08 61.2 95 34.7
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-08 60.8 122 32.8
Atru.chr6.1288 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-08 60.8 124 29.8
CANSAT64G1779 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-08 60.8 122 29.5
CANSAT78G0208 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-08 60.8 92 34.8
FvH4_4g13062 Fragaria vesca HOM05D000003 ORTHO05D011454 8.0e-08 60.8 129 30.2
Atru.chr3.1567 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-07 60.5 123 32.5
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-07 60.5 123 32.5
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 1.0e-07 60.5 121 33.1
CANSAT25G0043 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-07 60.5 122 32.8
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-07 60.5 95 37.9
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.0e-07 60.5 126 28.6
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 122 32.0
Atru.chr6.778 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-07 60.1 107 36.4
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 122 32.0
CANSAT56G2394 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 122 29.5
CANSAT56G4436 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 122 32.0
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-07 60.1 120 34.2
Gohir.D01G150225 Gossypium hirsutum HOM05D013318 ORTHO05D012297 1.4e-07 60.1 93 34.4
Prupe.4G011200 Prunus persica HOM05D000003 ORTHO05D000004 1.4e-07 60.1 125 32.8
Atru.chr1.763 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 59.7 122 33.6
Atru.chr12.2514 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 59.7 128 33.6
Atru.chr2.2371 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-07 59.7 122 32.8
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 59.7 128 35.9
CANSAT54G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-07 59.7 118 34.7
Prupe.6G123900 Prunus persica HOM05D000003 ORTHO05D000004 1.8e-07 59.7 125 33.6
Aa31LG8G11510 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.3e-07 59.3 120 29.2
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 58.9 122 29.5
Atru.chr11.167 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-07 58.9 119 33.6
Atru.chr13.1676 Acer truncatum HOM05D000003 ORTHO05D000006 3.0e-07 58.9 85 38.8
Atru.chr6.887 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-07 58.9 95 38.9
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 3.0e-07 58.9 119 27.7
Atru.chr10.1987 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-07 58.5 126 33.3
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-07 58.5 93 36.6
Atru.chr2.2006 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-07 58.5 92 40.2
COL.COLO4_25140 Corchorus olitorius HOM05D000003 ORTHO05D017879 4.0e-07 58.5 89 36.0
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 4.0e-07 58.5 101 35.6
QL05p018687 Quercus lobata HOM05D000106 ORTHO05D000160 4.0e-07 58.5 94 33.0
Atru.chr1.1693 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-07 58.2 123 32.5
Atru.chr9.1174 Acer truncatum HOM05D000003 ORTHO05D000004 5.2e-07 58.2 121 30.6
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 58.2 117 31.6
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-07 58.2 123 31.7
CANSAT64G0935 Cannabis sativa HOM05D000003 ORTHO05D000167 5.2e-07 58.2 90 33.3
AUR62035911 Chenopodium quinoa HOM05D000003 ORTHO05D000004 5.2e-07 58.2 122 29.5
TPR.G29120 Trifolium pratense HOM05D000003 ORTHO05D000004 5.2e-07 58.2 124 27.4
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 5.2e-07 58.2 92 33.7
Atru.chr6.242 Acer truncatum HOM05D000003 ORTHO05D000006 6.8e-07 57.8 123 34.1
CANSAT21G1369 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-07 57.8 122 32.0
QL01p014938 Quercus lobata HOM05D000003 ORTHO05D000167 6.8e-07 57.8 95 33.7
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-07 57.4 122 29.5
Atru.chr11.717 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-07 57.4 121 28.9
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-07 57.4 122 32.0
CANSAT11G0402 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-07 57.4 118 33.9
Lj5A492G8 Lonicera japonica HOM05D000003 ORTHO05D013548 8.9e-07 57.4 98 33.7
Atru.chr11.961 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 121 31.4
Atru.chr9.1114 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 99 29.3
Aa31LG6G11540 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-06 57.0 129 31.8
QL03p040497 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 57.0 95 31.6
TAR121G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.2e-06 57.0 126 28.6
Atru.chr13.1617 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 122 32.8
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 122 30.3
Atru.chr6.783 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-06 56.6 121 32.2
CANSAT21G1908 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-06 56.6 120 27.5
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.5e-06 56.6 89 37.1
Atru.chr13.1037 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-06 56.2 81 39.5
Atru.chr3.2627 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-06 56.2 121 30.6
CANSAT56G3885 Cannabis sativa HOM05D000003 ORTHO05D000167 2.0e-06 56.2 120 28.3
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-06 56.2 122 30.3
FvH4_5g37180 Fragaria vesca HOM05D000003 ORTHO05D011454 2.0e-06 56.2 127 32.3
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 56.2 124 29.0
QL03p040865 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 56.2 95 31.6
Atru.chr11.155 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-06 55.8 123 30.9
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-06 55.8 106 31.1
Atru.chr7.658 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-06 55.8 121 28.1
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-06 55.8 124 31.5
Ah.11g041700 Amaranthus hybridus HOM05D000003 ORTHO05D016463 2.6e-06 55.8 114 28.1
BcaC09g49394 Brassica carinata HOM05D000003 ORTHO05D000411 2.6e-06 55.8 124 30.6
BcaC07g39517 Brassica carinata HOM05D000003 ORTHO05D000925 3.4e-06 55.5 121 31.4
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 3.4e-06 55.5 126 27.0
CANSAT78G0646 Cannabis sativa HOM05D000003 ORTHO05D000004 3.4e-06 55.5 93 36.6
FvH4_3g26221 Fragaria vesca HOM05D000003 ORTHO05D000004 3.4e-06 55.5 92 31.5
QL02p073997 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-06 55.1 87 33.3
QL04p067637 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-06 55.1 97 33.0
SGA_v2.0_scaffold61G21264 Striga asiatica HOM05D017438 ORTHO05D000004 4.4e-06 55.1 88 35.2
TAR133G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 4.4e-06 55.1 125 29.6
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 5.7e-06 54.7 121 29.8
CANSAT21G2395 Cannabis sativa HOM05D000003 ORTHO05D000167 5.7e-06 54.7 122 29.5
SGA_v2.0_scaffold43G16501 Striga asiatica HOM05D000007 ORTHO05D021020 5.7e-06 54.7 126 30.2
Atru.chr2.1908 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-06 54.3 121 28.1
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 7.5e-06 54.3 96 30.2
Medtr4g065063 Medicago truncatula HOM05D000003 ORTHO05D000004 7.5e-06 54.3 79 38.0
Atru.chr11.1735 Acer truncatum HOM05D000003 ORTHO05D000126 9.8e-06 53.9 81 34.6
Atru.chr3.2934 Acer truncatum HOM05D000003 ORTHO05D000006 9.8e-06 53.9 90 33.3
BcaC04g23534 Brassica carinata HOM05D000003 ORTHO05D000411 9.8e-06 53.9 130 32.3
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 9.8e-06 53.9 104 27.9
PSO339G0577 Papaver somniferum HOM05D000003 ORTHO05D000004 9.8e-06 53.9 91 34.1
QL02p088449 Quercus lobata HOM05D000003 ORTHO05D000004 9.8e-06 53.9 97 32.0
RcHm_v2.0_Chr4g0410641 Rosa chinensis HOM05D000003 ORTHO05D000004 9.8e-06 53.9 96 32.3
TPR.G631 Trifolium pratense HOM05D000003 ORTHO05D000004 9.8e-06 53.9 92 30.4


User provided reference genes

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