Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 2.0e-71 272.3 139 100.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 1.2e-68 263.1 138 97.1
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 1.6e-68 262.7 138 97.1
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 2.3e-67 258.8 138 95.7
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 6.8e-35 151.0 134 59.0
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 1.5e-34 149.8 138 55.1
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 2.0e-34 149.4 135 56.3
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 1.3e-33 146.7 113 65.5
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 3.2e-32 142.1 135 54.8
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 9.2e-32 140.6 122 59.0
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 6.0e-31 137.9 139 52.5
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 1.7e-30 136.3 131 53.4
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 6.6e-30 134.4 95 69.5
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 2.5e-29 132.5 122 52.5
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 5.6e-29 131.3 134 50.7
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 1.2e-28 130.2 118 53.4
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 2.1e-28 129.4 121 55.4
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 2.8e-28 129.0 116 56.0
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 2.8e-28 129.0 110 51.8
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 4.7e-28 128.3 131 51.1
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 8.1e-28 127.5 94 67.0
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.1e-27 127.1 95 65.3
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 1.4e-27 126.7 143 49.0
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 3.1e-27 125.6 89 67.4
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 4.0e-27 125.2 126 52.4
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.2e-26 123.6 95 63.2
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 1.2e-26 123.6 95 63.2
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 2.0e-26 122.9 142 48.6
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 2.6e-26 122.5 134 49.3
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 5.8e-26 121.3 126 50.8
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.7e-25 119.8 82 68.3
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 2.2e-25 119.4 109 56.0
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 2.9e-25 119.0 92 62.0
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 2.9e-25 119.0 92 62.0
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 3.7e-25 118.6 127 48.8
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 4.9e-25 118.2 89 65.2
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 8.4e-25 117.5 111 53.2
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 2.4e-24 115.9 93 57.0
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 2.4e-24 115.9 111 53.2
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 5.4e-24 114.8 123 50.4
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.2e-23 113.6 104 50.0
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.6e-23 113.2 101 51.5
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 2.1e-23 112.8 125 45.6
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 3.5e-23 112.1 100 52.0
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 7.8e-23 110.9 117 49.6
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 7.8e-23 110.9 117 49.6
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 7.8e-23 110.9 111 51.4
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.7e-22 109.8 104 51.0
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 3.9e-22 108.6 88 54.5
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 1.5e-21 106.7 136 45.6
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 1.9e-21 106.3 121 45.5
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 6.2e-20 101.3 99 50.5
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 1.1e-19 100.5 108 47.2
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 1.8e-19 99.8 66 66.7
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 4.0e-19 98.6 86 54.7
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 5.2e-19 98.2 126 42.1
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 6.8e-19 97.8 93 50.5
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 1.5e-18 96.7 69 65.2
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 2.0e-18 96.3 71 63.4
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 3.4e-18 95.5 128 40.6
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 4.4e-18 95.1 57 71.9
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 9.9e-18 94.0 71 62.0
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.2e-17 92.8 62 66.1
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 2.9e-17 92.4 69 60.9
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 4.9e-17 91.7 59 69.5
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 4.9e-17 91.7 59 69.5
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 6.4e-17 91.3 57 68.4
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 6.4e-17 91.3 60 65.0
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 2.4e-16 89.4 69 59.4
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 4.2e-16 88.6 87 49.4
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 9.3e-16 87.4 79 50.6
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.6e-15 86.7 84 50.0
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 2.1e-15 86.3 57 63.2
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 2.7e-15 85.9 57 66.7
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 7.8e-15 84.3 101 39.6
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.0e-14 84.0 103 46.6
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 3.0e-14 82.4 87 46.0
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 3.0e-14 82.4 127 37.0
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 6.6e-14 81.3 188 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 2.8e-12 75.9 74 45.9
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 4.8e-12 75.1 94 45.7
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 1.5e-10 70.1 38 78.9
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 2.9e-09 65.9 78 38.5
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 6.4e-09 64.7 51 60.8
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.1e-08 63.9 41 65.9
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 7.1e-08 61.2 49 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3283 Anthoceros agrestis HOM05D007718 ORTHO05D009752 1.3e-06 57.0 50 48.0
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 3.0e-06 55.8 82 39.0


User provided reference genes

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