Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G197000 Manihot esculenta HOM05D003905 ORTHO05D011420 0.0e+00 1654.4 839 100.0
Haze_21293 Corylus avellana HOM05D003905 ORTHO05D011420 4.4e-145 519.6 868 42.7
Cfa012940 Carpinus fangiana HOM05D003905 ORTHO05D011420 4.1e-143 513.1 869 41.9
QL02p026094 Quercus lobata HOM05D003905 ORTHO05D011420 1.4e-135 488.0 858 40.0
RcHm_v2.0_Chr7g0228011 Rosa chinensis HOM05D003905 ORTHO05D011420 4.6e-102 376.7 838 37.2
FAN18G0158 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.9e-100 371.3 837 36.8
Prupe.1G553900 Prunus persica HOM05D003905 ORTHO05D011420 1.9e-100 371.3 838 36.5
FvH4_5g32010 Fragaria vesca HOM05D003905 ORTHO05D011420 3.7e-99 367.1 837 36.8
Duzib177G1174 Durio zibethinus HOM05D003905 ORTHO05D011420 6.4e-96 356.3 862 34.1
FAN04G1043 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.9e-95 354.8 837 36.0
FAN08G2565 Fragaria x ananassa HOM05D003905 ORTHO05D011420 2.5e-95 354.4 827 36.4
TAR624G0280 Trochodendron aralioides HOM05D003905 ORTHO05D011420 2.3e-85 321.2 763 34.9
TAR624G1117 Trochodendron aralioides HOM05D003905 ORTHO05D011420 1.1e-79 302.4 752 34.0
Actinidia01556 Actinidia chinensis HOM05D003905 ORTHO05D011420 2.5e-71 274.6 840 31.7
TAR381G0253 Trochodendron aralioides HOM05D003905 ORTHO05D011420 1.1e-63 249.2 594 35.0
ATR1134G065 Amborella trichopoda HOM05D003905 ORTHO05D005329 4.4e-28 131.0 572 28.1
Oeu006588.1 Olea europaea HOM05D019587 ORTHO05D011420 6.4e-27 127.1 774 25.8
MBI10_g30419_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 1.1e-26 126.3 664 25.5
Gorai.010G002900 Gossypium raimondii HOM05D003905 ORTHO05D005329 2.1e-17 95.5 431 27.8
MBI05_g23390_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 1.3e-16 92.8 287 32.4
TAR625G1519 Trochodendron aralioides HOM05D003905 ORTHO05D005329 5.1e-16 90.9 421 27.6
Gohir.D06G005700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 6.6e-16 90.5 435 28.0
Manes.18G012100 Manihot esculenta HOM05D003905 ORTHO05D005329 3.6e-14 84.7 544 25.4
Potri.005G241400 Populus trichocarpa HOM05D003905 ORTHO05D005329 3.6e-14 84.7 701 24.1
Sabra05G0186900 Salix brachista HOM05D003905 ORTHO05D005329 3.6e-14 84.7 693 24.4
CAN.G1925.3 Capsicum annuum HOM05D003905 ORTHO05D005329 8.1e-14 83.6 446 27.4
Gohir.A06G002700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 8.1e-14 83.6 434 26.3
Sabra13G0112200 Salix brachista HOM05D003905 ORTHO05D005329 1.1e-13 83.2 370 28.4
Nitab4.5_0005970g0010 Nicotiana tabacum HOM05D003905 ORTHO05D005329 2.3e-13 82.0 412 25.0
CiPaw.08G067200 Carya illinoinensis HOM05D003905 ORTHO05D005329 3.1e-13 81.6 547 23.9
SEGI_23721 Sequoiadendron giganteum HOM05D003905 ORTHO05D005329 5.2e-13 80.9 398 27.6
EL10Ac1g00124 Beta vulgaris HOM05D017651 ORTHO05D011420 6.8e-13 80.5 423 27.2
Eucgr.H00969 Eucalyptus grandis HOM05D003905 ORTHO05D005329 6.8e-13 80.5 384 25.8
Nitab4.5_0003251g0050 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.5e-12 79.3 481 26.6
Nitab4.5_0000337g0040 Nicotiana tabacum HOM05D003905 ORTHO05D005329 2.0e-12 79.0 537 25.3
TAR381G0315 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.6e-12 78.6 433 27.3
EL10Ac1g02168 Beta vulgaris HOM05D003905 ORTHO05D005329 4.4e-12 77.8 390 27.7
Ciclev10000122m.g Citrus clementina HOM05D003905 ORTHO05D005329 4.4e-12 77.8 446 25.8
Duzib041G0770 Durio zibethinus HOM05D003905 ORTHO05D005329 4.4e-12 77.8 420 26.0
PGSC0003DMG400029336 Solanum tuberosum HOM05D003905 ORTHO05D005329 4.4e-12 77.8 389 28.8
Hma1.2p1_0023F.1_g015570 Hydrangea macrophylla HOM05D003905 ORTHO05D005329 7.6e-12 77.0 542 25.3
Sopen12g031180 Solanum pennellii HOM05D003905 ORTHO05D005329 7.6e-12 77.0 399 27.6
TAR381G1218 Trochodendron aralioides HOM05D003905 ORTHO05D005329 9.9e-12 76.6 429 27.0
CANSAT25G2239 Cannabis sativa HOM05D003905 ORTHO05D005329 1.3e-11 76.3 526 25.5
Sabra02G0016300 Salix brachista HOM05D003905 ORTHO05D005329 1.3e-11 76.3 533 23.8
Potri.002G020000 Populus trichocarpa HOM05D003905 ORTHO05D005329 1.7e-11 75.9 878 23.2
Dinv39531 Davidia involucrata HOM05D003905 ORTHO05D005329 2.2e-11 75.5 385 26.5
TAR376G0902 Trochodendron aralioides HOM05D003905 ORTHO05D005329 2.2e-11 75.5 557 24.2
Actinidia16997 Actinidia chinensis HOM05D003905 ORTHO05D005329 4.9e-11 74.3 483 23.4
Peaxi162Scf00553g00071 Petunia axillaris HOM05D003905 ORTHO05D005329 4.9e-11 74.3 409 24.7
Atru.chr13.267 Acer truncatum HOM05D003905 ORTHO05D005329 8.3e-11 73.6 428 25.0
Ah.11g039850 Amaranthus hybridus HOM05D003905 ORTHO05D005329 1.9e-10 72.4 530 24.7
AUR62022647 Chenopodium quinoa HOM05D017651 ORTHO05D011420 2.4e-10 72.0 379 24.0
AUR62022648 Chenopodium quinoa HOM05D017651 ORTHO05D011420 2.4e-10 72.0 379 24.0
Duzib093G0852 Durio zibethinus HOM05D003905 ORTHO05D005329 2.4e-10 72.0 526 24.1
Migut.N03170 Erythranthe guttata HOM05D003905 ORTHO05D005329 4.1e-10 71.2 472 26.9
Sed0006884 Sechium edule HOM05D003905 ORTHO05D005329 5.4e-10 70.9 547 25.0
ClCG05G018200 Citrullus lanatus HOM05D003905 ORTHO05D005329 7.1e-10 70.5 390 27.4
Prupe.1G363500 Prunus persica HOM05D003905 ORTHO05D005329 7.1e-10 70.5 407 26.5
DCAR_016728 Daucus carota HOM05D003905 ORTHO05D005329 9.2e-10 70.1 403 26.3
Lj4C22T7 Lonicera japonica HOM05D003905 ORTHO05D005329 9.2e-10 70.1 228 32.9
PSO675G3234 Papaver somniferum HOM05D003905 ORTHO05D005329 9.2e-10 70.1 529 24.8
Solyc12g089320.3 Solanum lycopersicum HOM05D003905 ORTHO05D005329 9.2e-10 70.1 322 27.6
AUR62044752 Chenopodium quinoa HOM05D017651 ORTHO05D011420 1.6e-09 69.3 272 26.5
Cc10_g01500 Coffea canephora HOM05D003905 ORTHO05D005329 2.1e-09 68.9 387 25.8
MELO3C003744.2 Cucumis melo HOM05D003905 ORTHO05D005329 2.1e-09 68.9 390 27.2
TWI56G0857 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 2.1e-09 68.9 527 24.1
GSVIVG01024041001 Vitis vinifera HOM05D003905 ORTHO05D005329 2.1e-09 68.9 395 25.6
MSTRG.1559 Avicennia marina HOM05D019587 ORTHO05D011420 2.7e-09 68.6 754 23.3
CSS0039596 Camellia sinensis var. sinensis HOM05D003905 ORTHO05D005329 2.7e-09 68.6 394 25.9
Glyma.14G219900 Glycine max HOM05D003905 ORTHO05D005329 2.7e-09 68.6 651 23.2
CsaV3_3G045950 Cucumis sativus L. HOM05D003905 ORTHO05D005329 3.5e-09 68.2 390 26.9
Zm00001eb228940 Zea mays HOM05D003905 ORTHO05D005329 3.5e-09 68.2 290 29.3
MSTRG.24238 Avicennia marina HOM05D003905 ORTHO05D005329 4.6e-09 67.8 573 25.0
Gohir.D05G188500 Gossypium hirsutum HOM05D003905 ORTHO05D005329 4.6e-09 67.8 298 25.8
Nn5g30748 Nelumbo nucifera HOM05D003905 ORTHO05D005329 6.0e-09 67.4 267 29.6
ATR0579G136 Amborella trichopoda HOM05D003905 ORTHO05D005329 7.8e-09 67.0 357 26.1
Cfa013971 Carpinus fangiana HOM05D003905 ORTHO05D005329 7.8e-09 67.0 679 23.6
PSO541G2778 Papaver somniferum HOM05D003905 ORTHO05D005329 7.8e-09 67.0 830 22.7
Medtr1g025500 Medicago truncatula HOM05D003905 ORTHO05D005329 1.0e-08 66.6 404 25.0
Gorai.009G193800 Gossypium raimondii HOM05D003905 ORTHO05D005329 1.7e-08 65.9 298 25.5
THA.LOC104806874 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 1.7e-08 65.9 203 33.5
THA.LOC104814731 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 1.7e-08 65.9 203 33.5
GSVIVG01034470001 Vitis vinifera HOM05D003905 ORTHO05D011420 2.3e-08 65.5 159 32.7
Glyma.04G023600 Glycine max HOM05D003905 ORTHO05D005329 3.9e-08 64.7 407 24.1
Glyma.17G258900 Glycine max HOM05D003905 ORTHO05D005329 3.9e-08 64.7 658 22.6
Oeu014169.1 Olea europaea HOM05D003905 ORTHO05D005329 3.9e-08 64.7 265 28.7
Lj5g0020561 Lotus japonicus HOM05D003905 ORTHO05D005329 6.6e-08 63.9 574 23.0
Psat6g002200 Pisum sativum HOM05D003905 ORTHO05D005329 6.6e-08 63.9 416 25.2
TPR.G26376 Trifolium pratense HOM05D003905 ORTHO05D005329 6.6e-08 63.9 404 25.2
CiPaw.07G148100 Carya illinoinensis HOM05D003905 ORTHO05D005329 8.6e-08 63.5 235 28.1
Ca_13435_v3 Cicer arietinum L. HOM05D003905 ORTHO05D005329 8.6e-08 63.5 408 24.5
Sc15g0004870 Simmondsia chinensis HOM05D003905 ORTHO05D005329 1.1e-07 63.2 690 22.9
unitig_8.g3383 Utricularia gibba HOM05D003905 ORTHO05D005329 1.1e-07 63.2 395 24.6
AUR62035030 Chenopodium quinoa HOM05D003905 ORTHO05D005329 1.9e-07 62.4 425 25.4
Ah.05g178450 Amaranthus hybridus HOM05D017651 ORTHO05D011420 2.5e-07 62.0 229 28.4
Rhsim06G0019800 Rhododendron simsii HOM05D003905 ORTHO05D005329 2.5e-07 62.0 346 28.6
COL.COLO4_26128 Corchorus olitorius HOM05D003905 ORTHO05D005329 3.3e-07 61.6 853 21.8
Duzib116G0388 Durio zibethinus HOM05D003905 ORTHO05D005329 3.3e-07 61.6 751 21.8
MD08G1010900 Malus domestica HOM05D003905 ORTHO05D005329 4.3e-07 61.2 443 24.4
Glyma.06G023600 Glycine max HOM05D003905 ORTHO05D005329 5.6e-07 60.8 457 23.6
PGR042G1841 Punica granatum HOM05D003905 ORTHO05D011420 5.6e-07 60.8 252 28.2
Lj5g0002583 Lotus japonicus HOM05D003905 ORTHO05D005329 7.3e-07 60.5 452 24.3
VMungo0647G0001 Vigna mungo HOM05D003905 ORTHO05D005329 7.3e-07 60.5 706 24.6
QL02p011991 Quercus lobata HOM05D003905 ORTHO05D005329 9.6e-07 60.1 329 24.9
Oeu061973.1 Olea europaea HOM05D003905 ORTHO05D005329 1.2e-06 59.7 371 26.1
unitig_22.g6796 Utricularia gibba HOM05D003905 ORTHO05D005329 1.2e-06 59.7 563 22.7
Lj4C798T8 Lonicera japonica HOM05D003905 ORTHO05D005329 1.6e-06 59.3 316 25.6
TWI36G1438 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 1.6e-06 59.3 387 25.1
SalBow7G2555 Salvia bowleyana HOM05D019587 ORTHO05D011420 2.8e-06 58.5 301 26.2
GSVIVG01009936001 Vitis vinifera HOM05D003905 ORTHO05D005329 2.8e-06 58.5 402 26.4
Lalb_Chr11g0061811 Lupinus albus HOM05D003905 ORTHO05D005329 6.2e-06 57.4 211 29.9
Sed0012955 Sechium edule HOM05D003905 ORTHO05D005329 6.2e-06 57.4 387 26.9


User provided reference genes

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