Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 0.0e+00 1174.8 589 100.0
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 7.6e-277 956.8 592 84.1
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.4e-238 829.7 593 74.0
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 6.5e-236 820.8 595 72.9
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 1.4e-230 803.1 593 72.2
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 3.8e-228 795.0 590 71.0
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.9e-219 766.1 603 68.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 5.2e-217 758.1 605 68.1
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.2e-216 756.9 617 66.1
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 4.1e-214 748.4 618 65.7
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 8.5e-212 740.7 602 65.4
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 8.0e-210 734.2 538 71.0
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 1.0e-209 733.8 611 66.0
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 1.8e-209 733.0 592 65.2
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 3.0e-209 732.3 596 66.3
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 5.2e-209 731.5 607 63.6
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 6.8e-209 731.1 487 76.0
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 8.8e-209 730.7 592 65.0
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 8.3e-207 724.2 618 64.4
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 1.0e-204 717.2 535 69.3
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 5.0e-204 714.9 604 65.7
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 6.5e-204 714.5 606 64.9
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 1.9e-203 713.0 615 65.7
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.6e-202 709.9 579 66.7
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 2.1e-202 709.5 593 64.4
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 1.4e-201 706.8 613 63.3
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 3.0e-201 705.7 534 69.3
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 6.8e-201 704.5 616 63.3
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.6e-200 702.6 605 63.1
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 6.3e-199 698.0 613 62.5
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 1.6e-197 693.3 447 77.2
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 3.5e-197 692.2 528 68.4
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 4.5e-197 691.8 627 61.2
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.7e-196 689.9 413 80.9
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.8e-196 688.7 512 69.3
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 5.0e-196 688.3 569 66.3
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.5e-195 686.0 530 67.5
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 2.5e-195 686.0 606 60.7
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 3.3e-195 685.6 606 61.2
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 4.3e-195 685.3 413 81.4
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 9.5e-195 684.1 616 62.7
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 1.2e-194 683.7 429 78.6
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 2.1e-194 682.9 521 69.5
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.6e-194 682.2 616 62.5
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 3.6e-194 682.2 602 61.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 4.7e-194 681.8 514 69.3
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 6.1e-194 681.4 633 61.8
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 6.1e-194 681.4 604 62.3
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.0e-193 680.6 604 61.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.4e-193 680.2 520 67.5
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.8e-193 679.9 618 62.3
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 1.2e-192 677.2 595 62.5
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 1.2e-192 677.2 526 66.3
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 1.2e-192 677.2 505 69.7
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.5e-192 676.8 608 62.2
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 2.6e-192 676.0 612 61.6
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 3.4e-192 675.6 608 61.5
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 7.5e-192 674.5 581 61.8
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 7.5e-192 674.5 618 61.8
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 9.8e-192 674.1 608 60.2
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.7e-191 673.3 520 66.9
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 1.7e-191 673.3 554 66.4
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 2.2e-191 672.9 544 65.6
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 1.1e-190 670.6 528 67.0
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.4e-190 669.5 493 71.6
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 3.2e-190 669.1 425 78.6
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 4.1e-190 668.7 426 77.2
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 7.0e-190 667.9 610 61.6
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-189 667.2 581 64.0
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.6e-189 666.8 491 70.1
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 1.6e-189 666.8 595 60.7
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 1.6e-189 666.8 607 60.0
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.6e-189 666.8 516 67.4
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 2.7e-189 666.0 600 62.5
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 3.5e-189 665.6 433 77.8
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 4.6e-189 665.2 599 62.4
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 7.8e-189 664.5 527 65.5
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 1.3e-188 663.7 442 74.7
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 1.3e-188 663.7 599 62.1
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.7e-188 663.3 527 66.0
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 1.7e-188 663.3 406 79.6
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 3.0e-188 662.5 525 67.2
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 3.9e-188 662.1 527 67.7
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 6.6e-188 661.4 600 60.5
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.5e-187 660.2 600 61.8
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 3.3e-187 659.1 579 61.3
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 4.3e-187 658.7 496 69.2
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 7.3e-187 657.9 619 59.5
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 9.5e-187 657.5 606 59.6
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.5e-187 657.5 497 69.0
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 1.2e-186 657.1 407 78.6
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 2.1e-186 656.4 433 76.0
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.8e-186 656.0 614 60.7
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 1.1e-185 654.1 591 60.9
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 1.1e-185 654.1 573 61.6
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 1.1e-185 654.1 618 59.4
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 5.2e-185 651.7 591 60.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 8.9e-185 651.0 606 60.2
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 1.2e-184 650.6 591 60.6
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 1.5e-184 650.2 476 70.8
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 2.6e-184 649.4 598 59.9
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 2.6e-184 649.4 591 59.9
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 2.6e-184 649.4 599 60.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 4.4e-184 648.7 604 59.9
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 5.8e-184 648.3 597 59.3
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 2.2e-183 646.4 600 61.0
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 2.2e-183 646.4 600 61.0
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 2.2e-183 646.4 600 61.0
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 2.2e-183 646.4 436 72.7
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.9e-182 643.3 565 62.5
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.2e-182 642.5 501 67.1
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 4.1e-182 642.1 413 74.3
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 9.2e-182 641.0 407 76.9
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 2.7e-181 639.4 606 59.6
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 3.5e-181 639.0 604 57.3
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 4.6e-181 638.6 458 69.7
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 1.3e-180 637.1 597 59.6
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 3.0e-180 636.0 435 73.3
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 3.9e-180 635.6 597 59.6
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 9.5e-179 630.9 593 58.7
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.2e-178 630.6 496 65.3
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 1.8e-177 626.7 520 62.7
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 2.3e-177 626.3 451 69.8
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 8.9e-177 624.4 502 65.1
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 3.7e-175 619.0 413 75.1
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 6.4e-175 618.2 614 57.8
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 1.6e-173 613.6 405 73.8
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.1e-172 608.6 522 62.3
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 3.3e-171 605.9 568 56.5
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 1.2e-170 604.0 602 56.3
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 6.2e-170 601.7 554 60.8
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 9.9e-168 594.3 469 65.2
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 7.8e-165 584.7 439 70.4
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 1.5e-163 580.5 431 68.7
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 2.8e-162 576.2 361 77.3
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 1.4e-161 573.9 416 69.0
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 8.7e-148 528.1 593 54.1
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 4.9e-143 512.3 354 68.6
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.6e-141 505.8 402 62.2
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 9.0e-137 491.5 517 52.0
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 3.3e-131 473.0 375 65.1
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 8.2e-130 468.4 343 67.1
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.1e-129 466.5 300 72.0
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.2e-101 374.8 209 83.7
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 2.0e-96 357.5 195 85.6
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 4.5e-96 356.3 392 50.0
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.3e-90 335.5 394 53.8
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 5.5e-86 322.8 178 84.3
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 3.2e-73 280.4 157 83.4
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.2e-72 278.5 154 84.4
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.2e-72 278.5 154 84.4
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 6.6e-71 272.7 193 68.4
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.9e-62 244.6 362 38.4
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.3e-62 243.4 407 40.0
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 2.4e-49 201.1 233 53.6
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 9.2e-49 199.1 183 51.9
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 2.3e-47 194.5 282 38.3
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.8e-45 186.8 127 73.2
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 3.4e-43 180.6 109 78.0
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 3.8e-42 177.2 186 51.6
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 9.9e-35 152.5 155 53.5
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 4.9e-34 150.2 110 63.6
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-32 145.6 215 37.2
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 2.1e-32 144.8 99 72.7
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.5e-32 144.1 88 76.1
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 4.6e-32 143.7 83 77.1
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 1.9e-30 138.3 83 73.5
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 5.6e-30 136.7 127 57.5
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 3.1e-20 104.4 117 48.7
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 7.1e-17 93.2 96 52.1
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 6.7e-15 86.7 243 37.4
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.6e-13 82.0 175 33.7
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 2.8e-13 81.3 88 50.0
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 5.0e-10 70.5 44 77.3
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 1.9e-09 68.6 111 38.7
Rhsim01G0139900 Rhododendron simsii HOM05D002321 ORTHO05D006445 4.6e-08 63.9 57 61.4
TAR624G1033 Trochodendron aralioides HOM05D003880 ORTHO05D415972 4.3e-06 57.4 146 37.0


User provided reference genes

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