Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G188900 Manihot esculenta HOM05D007473 ORTHO05D009459 3.1e-50 201.4 99 100.0
Manes.18G098100 Manihot esculenta HOM05D007473 ORTHO05D009459 2.8e-43 178.3 97 88.7
Potri.013G116100 Populus trichocarpa HOM05D007473 ORTHO05D009459 8.6e-40 166.8 102 85.3
Sabra19G0097100 Salix brachista HOM05D007473 ORTHO05D009459 4.7e-38 161.0 103 82.5
Potri.019G086700 Populus trichocarpa HOM05D007473 ORTHO05D009459 1.8e-37 159.1 103 81.6
Thecc.08G199100 Theobroma cacao HOM05D007473 ORTHO05D009459 3.4e-36 154.8 100 82.0
COL.COLO4_36790 Corchorus olitorius HOM05D007473 ORTHO05D009459 7.5e-36 153.7 100 79.0
Solyc11g013850.2 Solanum lycopersicum HOM05D007473 ORTHO05D009459 2.2e-35 152.1 100 78.0
Atru.chr13.1869 Acer truncatum HOM05D007473 ORTHO05D009459 2.8e-35 151.8 103 78.6
Duzib116G0725 Durio zibethinus HOM05D007473 ORTHO05D009459 2.8e-35 151.8 100 79.0
Nitab4.5_0000051g0010 Nicotiana tabacum HOM05D007473 ORTHO05D009459 2.8e-35 151.8 100 78.0
Duzib211G0408 Durio zibethinus HOM05D007473 ORTHO05D009459 3.7e-35 151.4 99 79.8
Nitab4.5_0004159g0050 Nicotiana tabacum HOM05D007473 ORTHO05D009459 6.3e-35 150.6 100 77.0
Ciclev10003143m.g Citrus clementina HOM05D007473 ORTHO05D009459 1.1e-34 149.8 100 78.0
Cpa.g.sc66.113 Carica papaya HOM05D007473 ORTHO05D009459 1.8e-34 149.1 100 77.0
Gohir.A09G117600 Gossypium hirsutum HOM05D007473 ORTHO05D009459 1.8e-34 149.1 100 77.0
Gohir.D09G114400 Gossypium hirsutum HOM05D007473 ORTHO05D009459 1.8e-34 149.1 100 77.0
Gorai.006G132300 Gossypium raimondii HOM05D007473 ORTHO05D009459 1.8e-34 149.1 100 77.0
Sopen11g008770 Solanum pennellii HOM05D007473 ORTHO05D009459 1.8e-34 149.1 100 77.0
GSVIVG01036821001 Vitis vinifera HOM05D007473 ORTHO05D009459 5.4e-34 147.5 102 75.5
PGSC0003DMG400030214 Solanum tuberosum HOM05D007473 ORTHO05D009459 7.0e-34 147.1 100 76.0
TWI59G1410 Tripterygium wilfordii HOM05D007473 ORTHO05D009459 1.6e-33 146.0 102 77.5
Ah.05g172820 Amaranthus hybridus HOM05D007473 ORTHO05D009459 2.0e-33 145.6 100 74.0
Hma1.2p1_0510F.1_g168850 Hydrangea macrophylla HOM05D007473 ORTHO05D009459 2.7e-33 145.2 101 74.3
AUR62004677 Chenopodium quinoa HOM05D000623 ORTHO05D007511 5.9e-33 144.1 99 72.7
Oeu054499.1 Olea europaea HOM05D007473 ORTHO05D009459 7.8e-33 143.7 100 75.0
AUR62023594 Chenopodium quinoa HOM05D007473 ORTHO05D009459 1.0e-32 143.3 101 71.3
QL09p016421 Quercus lobata HOM05D007473 ORTHO05D009459 2.9e-32 141.7 99 77.8
Sabra13G0098400 Salix brachista HOM05D007473 ORTHO05D009459 5.0e-32 141.0 97 76.3
TAR628G1168 Trochodendron aralioides HOM05D007473 ORTHO05D009459 5.0e-32 141.0 102 73.5
QL02p034734 Quercus lobata HOM05D007473 ORTHO05D009459 8.6e-32 140.2 99 76.8
MSTRG.25424 Avicennia marina HOM05D007473 ORTHO05D009459 1.1e-31 139.8 100 72.0
Sc23g0001050 Simmondsia chinensis HOM05D007473 ORTHO05D009459 3.3e-31 138.3 102 73.5
Cfa018218 Carpinus fangiana HOM05D007473 ORTHO05D009459 4.3e-31 137.9 102 73.5
SGA_v2.0_scaffold25G11079 Striga asiatica HOM05D007473 ORTHO05D009459 5.6e-31 137.5 93 75.3
Eucgr.F04148 Eucalyptus grandis HOM05D007473 ORTHO05D009459 9.5e-31 136.7 96 77.1
Prupe.8G051200 Prunus persica HOM05D007473 ORTHO05D009459 1.2e-30 136.3 97 72.2
CANSAT25G2275 Cannabis sativa HOM05D007473 ORTHO05D009459 1.6e-30 136.0 101 70.3
Cc00_g18070 Coffea canephora HOM05D007473 ORTHO05D009459 2.1e-30 135.6 100 72.0
Migut.C01206 Erythranthe guttata HOM05D007473 ORTHO05D009459 2.1e-30 135.6 100 72.0
MD05G1038600 Malus domestica HOM05D007473 ORTHO05D009459 8.0e-30 133.7 97 73.2
CiPaw.15G006600 Carya illinoinensis HOM05D007473 ORTHO05D009459 1.4e-29 132.9 101 73.3
CsaV3_7G024330 Cucumis sativus L. HOM05D007473 ORTHO05D009459 1.4e-29 132.9 98 72.4
ClCG09G010330 Citrullus lanatus HOM05D007473 ORTHO05D009459 1.8e-29 132.5 98 72.4
Nn1g08531 Nelumbo nucifera HOM05D007473 ORTHO05D009459 2.3e-29 132.1 102 71.6
MELO3C023649.2 Cucumis melo HOM05D007473 ORTHO05D009459 4.0e-29 131.3 98 71.4
Medtr1g097080 Medicago truncatula HOM05D007473 ORTHO05D009459 5.2e-29 131.0 100 74.0
Haze_17885 Corylus avellana HOM05D007473 ORTHO05D009459 6.8e-29 130.6 99 71.7
Aqoxy5G02488 Aquilegia oxysepala HOM05D007473 ORTHO05D009459 2.0e-28 129.0 101 68.3
Peaxi162Scf00476g00621 Petunia axillaris HOM05D007473 ORTHO05D009459 2.6e-28 128.6 91 73.6
Oeu017869.1 Olea europaea HOM05D007473 ORTHO05D009459 3.4e-28 128.3 100 72.0
EL10Ac3g06462 Beta vulgaris HOM05D007473 ORTHO05D009459 5.7e-28 127.5 94 69.1
Glyma.02G075700 Glycine max HOM05D007473 ORTHO05D009459 7.5e-28 127.1 104 65.4
Phvul.004G085900 Phaseolus vulgaris HOM05D007473 ORTHO05D009459 7.5e-28 127.1 104 65.4
Glyma.16G157600 Glycine max HOM05D007473 ORTHO05D009459 9.8e-28 126.7 104 65.4
MD10G1044400 Malus domestica HOM05D007473 ORTHO05D009459 9.8e-28 126.7 97 69.1
SalBow7G0569 Salvia bowleyana HOM05D007473 ORTHO05D009459 9.8e-28 126.7 100 72.0
THA.LOC104800103 Tarenaya hassleriana HOM05D007473 ORTHO05D009459 9.8e-28 126.7 99 72.7
TPR.G30581 Trifolium pratense HOM05D007473 ORTHO05D009459 9.8e-28 126.7 101 70.3
VMungo0464G1647 Vigna mungo HOM05D007473 ORTHO05D009459 3.7e-27 124.8 105 63.8
Sed0021533 Sechium edule HOM05D007473 ORTHO05D009459 4.9e-27 124.4 99 66.7
EL10Ac8g20095 Beta vulgaris HOM05D007473 ORTHO05D009459 6.4e-27 124.0 94 67.0
Sp5g26890 Schrenkiella parvula HOM05D007473 ORTHO05D009459 8.3e-27 123.6 103 65.0
SpUn0020_0080 Schrenkiella parvula HOM05D007473 ORTHO05D009459 8.3e-27 123.6 103 65.0
Thhalv10019351m.g Eutrema salsugineum HOM05D007473 ORTHO05D009459 1.1e-26 123.2 103 65.0
Lalb_Chr01g0009921 Lupinus albus HOM05D007473 ORTHO05D009459 1.4e-26 122.9 103 64.1
AL2G31450 Arabidopsis lyrata HOM05D007473 ORTHO05D009459 1.8e-26 122.5 99 67.7
AT1G71865 Arabidopsis thaliana HOM05D007473 ORTHO05D009459 2.4e-26 122.1 99 67.7
ATR0584G170 Amborella trichopoda HOM05D007473 ORTHO05D009459 5.4e-26 120.9 98 63.3
Lalb_Chr19g0129841 Lupinus albus HOM05D007473 ORTHO05D009459 5.4e-26 120.9 103 64.1
Carub.0002s1863 Capsella rubella HOM05D007473 ORTHO05D009459 7.0e-26 120.6 99 66.7
Psat6g188360 Pisum sativum HOM05D007473 ORTHO05D009459 7.0e-26 120.6 101 67.3
CARHR290890 Cardamine hirsuta HOM05D007473 ORTHO05D009459 2.7e-25 118.6 96 67.7
Lj5g0014701 Lotus japonicus HOM05D007473 ORTHO05D009459 2.7e-25 118.6 103 64.1
BolC6t39645H Brassica oleracea HOM05D007473 ORTHO05D009459 1.3e-24 116.3 99 63.6
BraA07t31366Z Brassica rapa HOM05D007473 ORTHO05D009459 1.3e-24 116.3 99 63.6
BcaC08g46619 Brassica carinata HOM05D007473 ORTHO05D009459 1.7e-24 115.9 99 63.6
A07p38010 Brassica napus HOM05D007473 ORTHO05D009459 1.7e-24 115.9 99 63.6
CSS0009978 Camellia sinensis var. sinensis HOM05D007473 ORTHO05D009459 1.7e-24 115.9 86 70.9
EL10Ac1g01496 Beta vulgaris HOM05D007473 ORTHO05D009459 2.3e-24 115.5 94 64.9
PSO017G2761 Papaver somniferum HOM05D007473 ORTHO05D009459 2.3e-24 115.5 100 60.0
Aa31LG4G8770 Aethionema arabicum HOM05D007473 ORTHO05D009459 7.3e-23 110.5 93 65.6
Os01g0871350 Oryza sativa ssp. japonica HOM05D007473 ORTHO05D009459 2.1e-22 109.0 100 58.0
A07p30540 Brassica napus HOM05D007473 ORTHO05D009459 2.8e-22 108.6 103 61.2
BcaC08g45751 Brassica carinata HOM05D007473 ORTHO05D009459 3.6e-22 108.2 103 61.2
BolC6t38636H Brassica oleracea HOM05D007473 ORTHO05D009459 3.6e-22 108.2 103 61.2
C06p35300 Brassica napus HOM05D007473 ORTHO05D009459 8.0e-22 107.1 100 62.0
Zm00001eb289250 Zea mays HOM05D007473 ORTHO05D009459 1.1e-21 106.7 101 57.4
BraA07t30689Z Brassica rapa HOM05D007473 ORTHO05D009459 1.8e-21 105.9 103 60.2
Hund27069 Selenicereus undatus HOM05D007473 ORTHO05D009459 4.9e-19 97.8 83 62.7
BcaC08g46617 Brassica carinata HOM05D007473 ORTHO05D009459 8.3e-19 97.1 106 56.6
EL10Ac8g20080 Beta vulgaris HOM05D007473 ORTHO05D009459 2.4e-18 95.5 89 61.8
SEGI_38346 Sequoiadendron giganteum HOM05D007473 ORTHO05D009459 4.6e-17 91.3 92 59.8
EL10Ac7g17167 Beta vulgaris HOM05D007473 ORTHO05D009459 7.8e-17 90.5 63 74.6
Aa31LG7G6620 Aethionema arabicum HOM05D007473 ORTHO05D009459 1.7e-16 89.4 79 63.3
EL10Ac4g08661 Beta vulgaris HOM05D007473 ORTHO05D009459 8.6e-16 87.0 92 53.3
EL10Ac8g20008 Beta vulgaris HOM05D007473 ORTHO05D009459 1.9e-15 85.9 75 64.0
Zm00001eb348670 Zea mays HOM05D007473 ORTHO05D009459 7.3e-15 84.0 89 55.1
BcaB03g15623 Brassica carinata HOM05D007473 ORTHO05D009459 1.1e-10 70.1 105 46.7
Hund16811 Selenicereus undatus HOM05D007473 ORTHO05D009459 5.6e-07 57.8 61 50.8
SEGI_24301 Sequoiadendron giganteum HOM05D007473 ORTHO05D009459 1.6e-06 56.2 104 37.5


User provided reference genes

Program Settings