Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.4e-147 526.2 257 100.0
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 3.7e-135 485.0 257 89.5
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 5.3e-134 481.1 256 90.2
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 1.0e-132 476.9 256 89.5
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 3.8e-132 474.9 258 89.5
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 3.6e-130 468.4 256 88.3
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 3.6e-130 468.4 258 88.4
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 7.9e-130 467.2 256 87.9
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 2.3e-129 465.7 258 88.8
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.1e-128 463.4 258 88.0
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 2.0e-128 462.6 258 86.8
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.3e-127 459.9 258 86.0
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.2e-127 459.1 258 85.7
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.2e-127 459.1 255 84.7
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 2.2e-127 459.1 258 86.0
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.7e-127 458.4 258 86.4
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 6.3e-127 457.6 257 85.6
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 8.2e-127 457.2 258 85.7
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 8.2e-127 457.2 257 86.4
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 8.2e-127 457.2 258 86.8
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.1e-126 456.8 257 86.4
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 4.1e-126 454.9 256 85.9
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 4.1e-126 454.9 257 85.6
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 85.2
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 85.2
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 2.0e-125 452.6 258 85.7
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.6e-125 452.2 255 84.3
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 84.8
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.2e-124 449.1 258 84.9
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 5.0e-124 448.0 257 84.0
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 83.7
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 83.7
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 8.5e-124 447.2 249 85.5
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 1.1e-123 446.8 258 83.7
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 1.1e-123 446.8 258 83.7
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.5e-123 446.4 256 83.2
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 1.9e-123 446.0 258 84.1
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 2.5e-123 445.7 258 84.1
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 3.2e-123 445.3 249 85.1
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 4.2e-123 444.9 258 84.1
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 4.2e-123 444.9 258 83.3
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 5.5e-123 444.5 258 82.2
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 5.5e-123 444.5 257 84.0
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 7.2e-123 444.1 258 82.9
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 9.4e-123 443.7 258 84.1
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 83.7
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 2.1e-122 442.6 258 84.1
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.1e-122 442.6 258 83.3
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.7e-122 442.2 257 83.3
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 2.7e-122 442.2 258 83.3
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.7
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.7
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.7
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.7
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.7
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 3.6e-122 441.8 258 83.3
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 4.7e-122 441.4 258 83.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 4.7e-122 441.4 265 81.9
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 6.1e-122 441.0 258 83.3
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 6.1e-122 441.0 258 83.3
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 1.0e-121 440.3 258 83.3
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.4e-121 439.9 258 83.3
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.4e-121 439.9 258 83.3
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.8e-121 439.5 257 83.3
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 3.0e-121 438.7 258 82.6
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 5.2e-121 438.0 258 82.2
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.7e-121 437.6 258 83.3
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 6.7e-121 437.6 258 82.2
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.0e-120 436.0 258 81.4
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.0e-120 436.0 258 82.9
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.0e-120 436.0 257 80.9
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 4.4e-120 434.9 258 82.9
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 5.7e-120 434.5 258 81.4
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 9.7e-120 433.7 272 77.9
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.8e-119 432.2 258 81.4
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.7e-119 431.8 272 77.6
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 6.3e-119 431.0 264 81.1
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 6.3e-119 431.0 258 81.8
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.1e-118 430.3 258 81.0
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-118 429.9 258 82.6
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.4e-118 429.9 258 82.6
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.4e-118 429.9 258 82.6
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 2.7e-117 425.6 303 71.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.0e-116 423.7 255 78.8
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 2.2e-116 422.5 231 87.9
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.2e-116 422.5 258 80.2
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 5.2e-113 411.4 249 79.1
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 6.8e-113 411.0 258 76.4
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 6.8e-113 411.0 258 79.5
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-112 410.2 257 78.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.2e-112 410.2 253 77.9
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 5.4e-110 401.4 281 73.3
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 9.1e-110 400.6 235 83.0
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.1e-106 389.4 250 74.8
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 4.7e-106 388.3 258 74.4
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 3.7e-103 378.6 215 83.7
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.8e-102 376.3 223 81.6
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 2.4e-102 375.9 231 76.2
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.2e-101 373.6 258 74.4
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 5.0e-100 368.2 258 73.3
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 9.2e-94 347.4 250 70.0
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 3.5e-93 345.5 199 83.4
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.3e-92 343.6 247 67.2
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 6.6e-92 341.3 251 66.1
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 3.1e-89 332.4 250 64.0
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.5e-88 330.1 251 65.3
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 9.2e-86 320.9 199 75.4
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 2.3e-73 279.6 171 78.9
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 7.6e-72 274.6 160 81.9
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.1e-70 270.8 154 85.7
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.6e-64 249.6 133 90.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 6.0e-61 238.4 143 81.1
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 9.6e-59 231.1 255 49.4
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 8.1e-58 228.0 248 46.8
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.9e-54 216.9 117 84.6
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.9e-54 216.9 131 80.2
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 5.4e-54 215.3 156 68.6
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 7.1e-54 214.9 199 59.8
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.7e-50 202.6 112 87.5
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 3.4e-48 196.1 268 40.3
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 9.9e-48 194.5 115 81.7
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 5.5e-46 188.7 105 86.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.0e-45 185.3 258 44.6
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 6.0e-45 185.3 105 83.8
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 5.6e-43 178.7 105 83.8
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 7.4e-43 178.3 105 81.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 3.4e-40 169.5 104 78.8
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 2.7e-37 159.8 96 75.0
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 2.3e-36 156.8 116 66.4
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 6.1e-29 132.1 102 64.7
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.4e-25 120.2 67 88.1
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 2.5e-22 110.2 97 63.9
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 3.2e-22 109.8 59 86.4
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.8e-17 94.0 55 81.8
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 4.7e-13 79.3 60 66.7
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 6.5e-07 58.9 40 72.5


User provided reference genes

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