Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G185600 Manihot esculenta HOM05D005543 ORTHO05D006584 4.7e-103 377.9 192 100.0
Potri.002G062300 Populus trichocarpa HOM05D005543 ORTHO05D006584 2.0e-77 292.7 192 74.5
TWI53G2072 Tripterygium wilfordii HOM05D005543 ORTHO05D006584 5.5e-75 284.6 192 70.8
Sabra02G0050300 Salix brachista HOM05D005543 ORTHO05D006584 2.7e-74 282.3 190 73.7
TAR625G0687 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.3e-73 279.3 192 69.3
Duzib116G0276 Durio zibethinus HOM05D005543 ORTHO05D006584 5.1e-73 278.1 192 69.3
Thecc.08G164300 Theobroma cacao HOM05D005543 ORTHO05D006584 6.7e-73 277.7 191 69.6
FAN15G0123 Fragaria x ananassa HOM05D005543 ORTHO05D006584 5.3e-70 268.1 192 65.6
Eucgr.F04165 Eucalyptus grandis HOM05D005543 ORTHO05D006584 9.0e-70 267.3 196 63.8
CiPaw.16G007100 Carya illinoinensis HOM05D005543 ORTHO05D006584 1.5e-69 266.5 191 66.0
Haze_17839 Corylus avellana HOM05D005543 ORTHO05D006584 1.5e-69 266.5 185 67.6
Nn5g28876 Nelumbo nucifera HOM05D005543 ORTHO05D006584 2.0e-69 266.2 160 71.9
Haze_17833 Corylus avellana HOM05D005543 ORTHO05D006584 7.6e-69 264.2 185 67.0
Gohir.D05G248600 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.0e-68 263.8 181 68.5
Gorai.009G259700 Gossypium raimondii HOM05D005543 ORTHO05D006584 1.0e-68 263.8 181 68.5
PGR102G0915 Punica granatum HOM05D005543 ORTHO05D006584 1.0e-68 263.8 190 67.9
FvH4_2g12791 Fragaria vesca HOM05D005543 ORTHO05D006584 1.3e-68 263.5 192 65.1
Gohir.A05G247100 Gossypium hirsutum HOM05D005543 ORTHO05D006584 1.3e-68 263.5 191 66.0
FAN24G1753 Fragaria x ananassa HOM05D005543 ORTHO05D006584 1.7e-68 263.1 192 65.6
Sabra05G0151400 Salix brachista HOM05D005543 ORTHO05D006584 3.8e-68 261.9 195 67.2
Hma1.2p1_0276F.1_g110980 Hydrangea macrophylla HOM05D005543 ORTHO05D006584 4.9e-68 261.5 199 62.8
MD05G1036200 Malus domestica HOM05D005543 ORTHO05D006584 4.9e-68 261.5 184 67.4
THA.LOC104800097 Tarenaya hassleriana HOM05D005543 ORTHO05D006584 4.9e-68 261.5 188 67.6
MELO3C019959.2 Cucumis melo HOM05D005543 ORTHO05D006584 6.5e-68 261.2 195 66.7
ClCG08G007180 Citrullus lanatus HOM05D005543 ORTHO05D006584 8.4e-68 260.8 195 67.2
CANSAT25G2335 Cannabis sativa HOM05D005543 ORTHO05D006584 1.4e-67 260.0 191 65.4
TAR381G0628 Trochodendron aralioides HOM05D005543 ORTHO05D006584 2.5e-67 259.2 192 71.4
Prupe.8G044500 Prunus persica HOM05D005543 ORTHO05D006584 3.2e-67 258.8 191 66.5
COL.COLO4_13722 Corchorus olitorius HOM05D005543 ORTHO05D006584 4.2e-67 258.5 192 63.5
Dinv41020 Davidia involucrata HOM05D005543 ORTHO05D006584 7.1e-67 257.7 178 68.5
RcHm_v2.0_Chr6g0273681 Rosa chinensis HOM05D005543 ORTHO05D006584 7.1e-67 257.7 158 74.7
MD10G1038300 Malus domestica HOM05D005543 ORTHO05D006584 2.7e-66 255.8 191 66.5
Atru.chr13.1972 Acer truncatum HOM05D005543 ORTHO05D006584 3.5e-66 255.4 182 63.7
Phvul.004G088200 Phaseolus vulgaris HOM05D005543 ORTHO05D006584 7.9e-66 254.2 190 64.2
Cc10_g06390 Coffea canephora HOM05D005543 ORTHO05D006584 1.8e-65 253.1 159 72.3
Glyma.16G160100 Glycine max HOM05D005543 ORTHO05D006584 1.8e-65 253.1 188 63.8
Sed0022332 Sechium edule HOM05D005543 ORTHO05D006584 1.8e-65 253.1 194 64.4
CSS0010673 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 2.3e-65 252.7 160 71.2
arahy.Tifrunner.gnm1.ann1.FFL75L Arachis hypogaea HOM05D005543 ORTHO05D006584 3.0e-65 252.3 187 64.2
MSTRG.22116 Avicennia marina HOM05D005543 ORTHO05D006584 1.9e-64 249.6 184 63.0
Ciclev10002600m.g Citrus clementina HOM05D005543 ORTHO05D006584 2.5e-64 249.2 156 73.1
VMungo0464G0571 Vigna mungo HOM05D005543 ORTHO05D006584 3.3e-64 248.8 187 63.1
Aa31LG4G8860 Aethionema arabicum HOM05D005543 ORTHO05D006584 1.6e-63 246.5 189 63.5
arahy.Tifrunner.gnm1.ann1.XA0Q13 Arachis hypogaea HOM05D005543 ORTHO05D006584 1.6e-63 246.5 187 62.6
Lj2g0006240 Lotus japonicus HOM05D005543 ORTHO05D006584 2.2e-63 246.1 189 63.0
Nitab4.5_0002585g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 2.2e-63 246.1 181 61.9
Sc20g0003140 Simmondsia chinensis HOM05D005543 ORTHO05D006584 2.2e-63 246.1 193 64.2
GSVIVG01013678001 Vitis vinifera HOM05D005543 ORTHO05D006584 2.2e-63 246.1 192 64.1
Thhalv10019179m.g Eutrema salsugineum HOM05D005543 ORTHO05D006584 2.8e-63 245.7 185 63.8
PSO541G4578 Papaver somniferum HOM05D005543 ORTHO05D006584 2.8e-63 245.7 195 60.5
Actinidia17758 Actinidia chinensis HOM05D005543 ORTHO05D006584 3.7e-63 245.4 187 62.6
SGA_v2.0_scaffold166G38393 Striga asiatica HOM05D005543 ORTHO05D006584 6.3e-63 244.6 189 59.8
A07p30600 Brassica napus HOM05D005543 ORTHO05D006584 1.8e-62 243.0 185 62.7
BraA07t30695Z Brassica rapa HOM05D005543 ORTHO05D006584 2.4e-62 242.7 185 62.7
Peaxi162Scf00226g00217 Petunia axillaris HOM05D005543 ORTHO05D006584 2.4e-62 242.7 177 62.7
Psat0s2687g0120 Pisum sativum HOM05D005543 ORTHO05D006584 3.1e-62 242.3 160 68.1
PSO675G1818 Papaver somniferum HOM05D005543 ORTHO05D006584 5.3e-62 241.5 194 58.8
Lsat_1_v5_gn_9_42581 Lactuca sativa HOM05D005543 ORTHO05D006584 9.0e-62 240.7 196 58.7
BolC6t38643H Brassica oleracea HOM05D005543 ORTHO05D006584 1.2e-61 240.4 185 61.6
Ah.05g168360 Amaranthus hybridus HOM05D005543 ORTHO05D006584 1.5e-61 240.0 160 65.6
Carub.0002s1854 Capsella rubella HOM05D005543 ORTHO05D006584 1.5e-61 240.0 185 62.2
Lalb_Chr06g0161821 Lupinus albus HOM05D005543 ORTHO05D006584 2.0e-61 239.6 189 59.8
CARHR291000 Cardamine hirsuta HOM05D005543 ORTHO05D006584 2.6e-61 239.2 185 63.8
ECA232G2646 Erigeron canadensis HOM05D005543 ORTHO05D006584 2.6e-61 239.2 182 63.7
Sp5g26800 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.6e-61 239.2 185 61.6
SpUn0095_0030 Schrenkiella parvula HOM05D005543 ORTHO05D006584 2.6e-61 239.2 185 61.6
Medtr6g034680 Medicago truncatula HOM05D005543 ORTHO05D006584 3.4e-61 238.8 192 58.9
AT1G71780 Arabidopsis thaliana HOM05D005543 ORTHO05D006584 4.5e-61 238.4 185 61.1
Solyc04g072120.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 5.9e-61 238.0 157 68.2
Nitab4.5_0001000g0150 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.0e-60 237.3 188 58.5
Sopen04g028290 Solanum pennellii HOM05D005543 ORTHO05D006584 1.0e-60 237.3 157 67.5
AL2G31350 Arabidopsis lyrata HOM05D005543 ORTHO05D006584 1.3e-60 236.9 185 61.1
BcaB03g15617 Brassica carinata HOM05D005543 ORTHO05D006584 1.3e-60 236.9 191 60.2
Peaxi162Scf00160g01739 Petunia axillaris HOM05D005543 ORTHO05D006584 1.3e-60 236.9 158 67.7
PGSC0003DMG400016956 Solanum tuberosum HOM05D005543 ORTHO05D006584 1.3e-60 236.9 152 69.1
HanXRQChr11g0320551 Helianthus annuus HOM05D005543 ORTHO05D006584 1.7e-60 236.5 193 60.1
Nitab4.5_0004541g0020 Nicotiana tabacum HOM05D005543 ORTHO05D006584 1.7e-60 236.5 181 61.9
BolC6t39636H Brassica oleracea HOM05D005543 ORTHO05D006584 2.2e-60 236.1 186 61.3
C06p45840 Brassica napus HOM05D005543 ORTHO05D006584 2.9e-60 235.7 186 61.3
PGSC0003DMG400031139 Solanum tuberosum HOM05D005543 ORTHO05D006584 3.8e-60 235.3 188 59.0
EL10Ac1g01633 Beta vulgaris HOM05D005543 ORTHO05D006584 5.0e-60 235.0 160 65.6
BcaC08g45757 Brassica carinata HOM05D005543 ORTHO05D006584 5.0e-60 235.0 185 60.5
C06p35380 Brassica napus HOM05D005543 ORTHO05D006584 5.0e-60 235.0 185 60.5
Sopen12g029440 Solanum pennellii HOM05D005543 ORTHO05D006584 5.0e-60 235.0 152 67.8
BcaC08g46604 Brassica carinata HOM05D005543 ORTHO05D006584 6.5e-60 234.6 186 60.8
BraA07t31358Z Brassica rapa HOM05D005543 ORTHO05D006584 6.5e-60 234.6 186 60.8
Nitab4.5_0000433g0010 Nicotiana tabacum HOM05D005543 ORTHO05D006584 6.5e-60 234.6 188 58.0
Hund17502 Selenicereus undatus HOM05D005543 ORTHO05D006584 8.5e-60 234.2 174 63.8
HPP92_007671 Vanilla planifolia HOM05D005543 ORTHO05D006584 8.5e-60 234.2 188 57.4
Nn1g05159 Nelumbo nucifera HOM05D005543 ORTHO05D006584 1.1e-59 233.8 150 68.7
unitig_578.g16221 Utricularia gibba HOM05D005543 ORTHO05D006584 1.1e-59 233.8 155 69.0
AUR62034923 Chenopodium quinoa HOM05D005543 ORTHO05D006584 3.2e-59 232.3 160 63.8
Solyc12g056760.2 Solanum lycopersicum HOM05D005543 ORTHO05D006584 4.2e-59 231.9 152 65.8
AUR62026611 Chenopodium quinoa HOM05D005543 ORTHO05D006584 5.5e-59 231.5 193 56.0
Ca_04656_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 1.2e-58 230.3 190 56.3
A07p37930 Brassica napus HOM05D005543 ORTHO05D006584 3.6e-58 228.8 186 59.7
Migut.N02941 Erythranthe guttata HOM05D005543 ORTHO05D006584 6.1e-58 228.0 156 62.8
DCAR_019968 Daucus carota HOM05D005543 ORTHO05D006584 3.9e-57 225.3 158 63.3
SalBow6G1236 Salvia bowleyana HOM05D005543 ORTHO05D006584 3.9e-57 225.3 190 54.7
Aqoxy6G00453 Aquilegia oxysepala HOM05D005543 ORTHO05D006584 1.1e-56 223.8 149 65.8
Lj7A386T90 Lonicera japonica HOM05D005543 ORTHO05D006584 3.3e-56 222.2 160 63.1
CDE05G2658 Ceratophyllum demersum HOM05D005543 ORTHO05D006584 4.3e-56 221.9 152 64.5
DCAR_009611 Daucus carota HOM05D005543 ORTHO05D006584 1.3e-55 220.3 154 64.9
vmacro21199 Vaccinium macrocarpon HOM05D005543 ORTHO05D006584 6.3e-55 218.0 204 53.9
Lj5g0027482 Lotus japonicus HOM05D005543 ORTHO05D006584 8.5e-52 207.6 151 63.6
Psat6g189440 Pisum sativum HOM05D005543 ORTHO05D006584 3.7e-47 192.2 159 54.7
Os01g0715800 Oryza sativa ssp. japonica HOM05D005543 ORTHO05D006584 1.4e-46 190.3 156 56.4
SEGI_03773 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.5e-45 186.8 158 51.3
SEGI_04047 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.5e-45 186.8 158 51.3
Ca_10645_v3 Cicer arietinum L. HOM05D005543 ORTHO05D006584 6.5e-44 181.4 159 51.6
Lj4A705G47 Lonicera japonica HOM05D005543 ORTHO05D006584 6.5e-44 181.4 157 59.2
BcaC08g46607 Brassica carinata HOM05D005543 ORTHO05D006584 1.4e-43 180.3 193 48.7
TPR.G17022 Trifolium pratense HOM05D005543 ORTHO05D006584 1.4e-43 180.3 155 53.5
Medtr1g097400 Medicago truncatula HOM05D005543 ORTHO05D006584 1.9e-43 179.9 155 52.9
SEGI_37275 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 4.2e-43 178.7 150 52.0
Cpa.g.sc26.124 Carica papaya HOM05D005543 ORTHO05D006584 2.6e-40 169.5 148 60.1
CsaV3_6G004850 Cucumis sativus L. HOM05D005543 ORTHO05D006584 4.1e-38 162.2 121 64.5
FAN27G1145 Fragaria x ananassa HOM05D005543 ORTHO05D006584 2.5e-35 152.9 110 67.3
Oeu022062.1 Olea europaea HOM05D005543 ORTHO05D006584 4.2e-35 152.1 117 62.4
CSS0045165 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 1.6e-34 150.2 120 61.7
Rhsim06G0093300 Rhododendron simsii HOM05D005543 ORTHO05D006584 1.4e-33 147.1 110 63.6
Zm00001eb121890 Zea mays HOM05D005543 ORTHO05D006584 5.3e-30 135.2 152 42.1
QL02p036789 Quercus lobata HOM05D005543 ORTHO05D006584 1.7e-28 130.2 123 53.7
QL02p036792 Quercus lobata HOM05D005543 ORTHO05D006584 1.7e-23 113.6 70 71.4
TPR.G22092 Trifolium pratense HOM05D005543 ORTHO05D006584 1.4e-22 110.5 71 67.6
Oeu022061.1 Olea europaea HOM05D005543 ORTHO05D006584 2.4e-22 109.8 73 65.8
SGA_v2.0_scaffold43G16323 Striga asiatica HOM05D005543 ORTHO05D006584 7.7e-21 104.8 72 56.9
CSS0016395 Camellia sinensis var. sinensis HOM05D005543 ORTHO05D006584 8.6e-20 101.3 68 66.2
SEGI_08036 Sequoiadendron giganteum HOM05D005543 ORTHO05D006584 1.9e-19 100.1 87 51.7
Mapoly0005s0207 Marchantia polymorpha HOM05D005543 ORTHO05D006584 4.7e-18 95.5 145 34.5
Sopen04g028180 Solanum pennellii HOM05D000002 ORTHO05D000047 4.7e-18 95.5 68 60.3
Cfa018258 Carpinus fangiana HOM05D005543 ORTHO05D006584 2.3e-12 76.6 62 61.3
VMungo1127G1001 Vigna mungo HOM05D005543 ORTHO05D006584 2.3e-12 76.6 64 57.8
Pp3c17_20130 Physcomitrium patens HOM05D005543 ORTHO05D006584 5.6e-11 72.0 143 23.8
SGA_v2.0_scaffold130G34341 Striga asiatica HOM05D005543 ORTHO05D006584 9.5e-11 71.2 45 66.7


User provided reference genes

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