Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.2e-74 283.5 188 100.0
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 1.2e-61 240.4 189 85.7
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.0e-61 239.6 189 86.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.7e-60 235.3 189 81.0
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 2.0e-58 229.6 189 79.4
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.5e-56 222.6 190 84.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.0e-54 217.2 188 80.9
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 4.0e-54 215.3 191 67.0
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.2e-54 214.9 191 66.5
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 5.7e-53 211.5 189 64.0
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 9.8e-53 210.7 188 71.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.3e-52 210.3 193 76.2
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.7e-52 209.9 188 75.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 6.4e-52 208.0 191 81.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 6.4e-52 208.0 189 63.0
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 1.1e-51 207.2 189 65.6
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.4e-51 206.8 190 80.5
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.8e-51 206.5 192 72.9
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.4e-51 206.1 196 75.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 4.1e-51 205.3 193 73.1
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 7.0e-51 204.5 188 61.2
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.7e-50 202.6 192 72.9
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 4.6e-50 201.8 191 70.7
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 5.9e-50 201.4 191 71.2
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 5.9e-50 201.4 190 63.2
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 7.8e-50 201.1 192 72.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 7.8e-50 201.1 191 69.1
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.0e-49 200.7 193 72.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.3e-49 200.3 193 76.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 3.0e-49 199.1 189 63.5
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 3.9e-49 198.7 188 72.9
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 6.6e-49 198.0 188 74.5
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.1e-48 197.2 188 75.5
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.5e-48 196.8 189 59.3
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.9e-48 196.4 190 64.7
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.9e-48 196.4 188 65.4
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 2.5e-48 196.1 192 71.9
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 3.3e-48 195.7 193 80.3
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.6e-48 194.9 189 75.1
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 7.3e-48 194.5 192 75.0
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 7.3e-48 194.5 189 60.8
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.2e-47 193.7 193 79.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.2e-47 193.7 189 65.6
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 2.1e-47 193.0 188 61.7
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.1e-47 193.0 192 77.1
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.1e-47 193.0 190 70.5
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 2.1e-47 193.0 189 70.9
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.8e-47 192.6 194 72.7
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.8e-47 192.6 190 68.9
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 3.6e-47 192.2 189 68.8
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.6e-47 192.2 190 71.1
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 4.7e-47 191.8 190 71.6
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.7e-47 191.8 188 67.6
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.7e-47 191.8 157 74.5
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 6.2e-47 191.4 189 68.8
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.1e-46 190.7 192 63.0
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-46 190.7 190 68.9
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.4e-46 190.3 188 69.7
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-46 190.3 190 68.4
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 1.8e-46 189.9 192 62.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.8e-46 189.9 189 74.6
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.8e-46 189.9 188 67.6
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.3e-46 189.5 194 74.7
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 3.1e-46 189.1 161 66.5
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 6.8e-46 188.0 190 66.8
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 8.9e-46 187.6 197 73.6
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.2e-45 187.2 190 67.4
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.5e-45 186.8 190 66.3
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.0e-45 186.4 189 69.3
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 2.6e-45 186.0 190 71.1
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 2.6e-45 186.0 190 71.1
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 2.6e-45 186.0 195 74.4
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.6e-45 186.0 190 66.8
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 3.4e-45 185.7 190 69.5
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 4.4e-45 185.3 191 68.1
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 5.8e-45 184.9 199 65.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 7.5e-45 184.5 190 74.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 7.5e-45 184.5 188 66.0
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 7.5e-45 184.5 189 59.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 9.8e-45 184.1 191 73.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 9.8e-45 184.1 189 70.9
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.8e-45 184.1 190 67.4
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 9.8e-45 184.1 145 77.9
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.3e-44 183.7 190 68.9
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-44 183.7 190 75.3
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.7e-44 183.3 161 63.4
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 2.9e-44 182.6 189 70.4
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.7e-44 182.2 193 67.4
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.7e-44 182.2 187 69.5
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 4.9e-44 181.8 190 70.5
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 4.9e-44 181.8 190 64.2
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 4.9e-44 181.8 161 62.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 8.3e-44 181.0 188 65.4
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 8.3e-44 181.0 191 63.9
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.9e-43 179.9 189 69.8
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 2.4e-43 179.5 198 61.1
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 3.2e-43 179.1 196 64.3
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.2e-43 179.1 191 61.8
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 4.1e-43 178.7 187 58.8
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.4e-43 178.3 138 86.2
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 7.0e-43 177.9 188 72.9
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 7.0e-43 177.9 192 59.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 7.0e-43 177.9 192 68.8
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 9.2e-43 177.6 154 76.0
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.2e-42 177.2 154 75.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 4.6e-42 175.3 182 69.8
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 1.0e-41 174.1 188 68.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.0e-41 174.1 183 61.7
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.3e-41 172.9 189 72.5
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.3e-41 172.9 190 74.7
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.5e-40 169.5 191 63.4
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.2e-39 167.2 168 68.5
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.2e-39 167.2 223 61.4
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.0e-38 162.2 170 73.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 8.9e-38 161.0 85 90.6
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.2e-37 160.6 150 64.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 5.8e-37 158.3 93 82.8
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 1.7e-36 156.8 191 61.3
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.7e-36 156.8 189 56.1
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 3.7e-36 155.6 191 56.5
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.9e-35 153.3 87 87.4
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.9e-35 153.3 207 51.7
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.7e-34 149.4 178 62.4
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.0e-33 147.5 203 55.7
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 5.2e-30 135.2 75 88.0
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 6.8e-30 134.8 70 91.4
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.2e-28 129.8 69 85.5
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.3e-25 120.6 142 61.3
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 3.9e-25 119.0 152 64.5
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.1e-24 117.5 115 73.0
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.6e-23 113.6 82 65.9
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.9e-22 108.2 175 61.7
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 2.0e-21 106.7 138 58.0
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 4.4e-21 105.5 111 54.1
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 5.8e-21 105.1 65 76.9
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 9.9e-21 104.4 70 75.7
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 9.9e-21 104.4 120 67.5
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.9e-20 102.8 149 61.7
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 2.4e-19 99.8 80 60.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 7.8e-18 94.7 82 56.1
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 5.1e-17 92.0 80 52.5
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.3e-16 89.0 56 78.6
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 3.5e-10 69.3 67 53.7
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 7.4e-08 61.6 106 53.8
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.8e-07 59.7 39 61.5


User provided reference genes

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