Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 4.1e-36 154.1 70 100.0
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.2e-34 148.3 70 95.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 5.0e-34 147.1 70 92.9
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 6.5e-34 146.7 70 92.9
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.5e-33 144.8 70 90.0
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.5e-33 143.7 69 91.3
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 7.2e-33 143.3 70 91.4
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 7.2e-33 143.3 68 91.2
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 9.3e-33 142.9 70 90.0
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 9.3e-33 142.9 69 89.9
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.2e-32 142.5 70 90.0
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.2e-32 142.5 70 88.6
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 88.6
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.1e-32 141.7 70 88.6
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 2.1e-32 141.7 69 88.4
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.6e-32 141.0 69 88.4
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 87.1
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 87.1
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-32 141.0 69 88.4
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 87.1
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 90.0
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 3.6e-32 141.0 70 87.1
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.6e-32 140.6 70 85.7
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.6e-32 140.6 70 88.6
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 4.6e-32 140.6 69 91.3
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 4.6e-32 140.6 70 87.1
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 6.1e-32 140.2 69 89.9
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.0e-31 139.4 70 87.1
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.0e-31 139.4 70 88.6
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.0e-31 139.4 69 87.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.0e-31 139.4 69 87.0
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.0e-31 139.4 70 90.0
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 1.4e-31 139.0 70 87.1
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.8e-31 138.7 70 87.1
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.8e-31 138.7 70 87.1
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.8e-31 138.7 69 85.5
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.3e-31 138.3 70 87.1
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 2.3e-31 138.3 70 85.7
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 2.3e-31 138.3 68 86.8
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 2.3e-31 138.3 70 85.7
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 2.3e-31 138.3 68 86.8
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.3e-31 138.3 70 87.1
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 3.0e-31 137.9 69 87.0
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 3.0e-31 137.9 70 87.1
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 3.0e-31 137.9 69 87.0
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 3.0e-31 137.9 70 87.1
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 3.9e-31 137.5 70 88.6
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 5.1e-31 137.1 69 88.4
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.1e-31 137.1 70 85.7
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 5.1e-31 137.1 70 84.3
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 85.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 6.7e-31 136.7 70 85.7
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 6.7e-31 136.7 69 85.5
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.1e-30 136.0 69 87.0
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.1e-30 136.0 69 88.4
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.1e-30 136.0 69 87.0
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 1.5e-30 135.6 70 84.3
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.9e-30 135.2 70 84.3
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 2.5e-30 134.8 69 87.0
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.5e-30 134.8 70 87.1
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.5e-30 134.8 70 87.1
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 2.5e-30 134.8 70 82.9
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 3.3e-30 134.4 69 85.5
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 3.3e-30 134.4 69 85.5
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 3.3e-30 134.4 69 85.5
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 3.3e-30 134.4 69 85.5
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 85.7
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 85.7
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 87.1
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.3e-30 134.0 70 84.3
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 7.4e-30 133.3 68 86.8
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 7.4e-30 133.3 70 84.3
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 81.4
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 81.4
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 9.7e-30 132.9 70 84.3
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 9.7e-30 132.9 68 80.9
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 1.3e-29 132.5 70 82.9
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 1.7e-29 132.1 69 82.6
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.2e-29 131.7 70 81.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.2e-29 131.7 70 82.9
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.8e-29 131.3 71 83.1
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 78.6
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.8e-29 131.3 70 81.4
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 3.7e-29 131.0 69 82.6
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.7e-29 131.0 70 78.6
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 3.7e-29 131.0 69 81.2
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 6.3e-29 130.2 70 81.4
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 82.9
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 80.0
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 8.2e-29 129.8 69 84.1
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 8.2e-29 129.8 70 80.0
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 80.0
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 84.3
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-28 129.4 70 84.3
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.4e-28 129.0 70 82.9
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.4e-28 129.0 93 66.7
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-28 128.6 69 81.2
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 80.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.8e-28 128.6 70 82.9
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 2.4e-28 128.3 68 80.9
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.1e-28 127.9 70 78.6
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 81.4
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 81.4
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 4.1e-28 127.5 70 81.4
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 5.3e-28 127.1 69 79.7
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 6.9e-28 126.7 70 81.4
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 6.9e-28 126.7 60 90.0
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 9.1e-28 126.3 69 79.7
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 1.2e-27 125.9 70 77.1
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 2.6e-27 124.8 68 79.4
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 4.5e-27 124.0 68 76.5
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 4.5e-27 124.0 69 71.0
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.5e-27 124.0 70 78.6
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.9e-27 123.6 70 80.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 7.7e-27 123.2 68 72.1
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-26 122.5 58 87.9
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.3e-26 122.5 61 85.2
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 77.1
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.3e-26 122.5 70 75.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.2e-26 121.7 60 88.3
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.2e-26 121.7 69 78.3
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.2e-26 121.7 60 85.0
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 2.2e-26 121.7 70 72.9
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-26 121.3 61 85.2
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 77.1
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 77.1
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.9e-26 121.3 70 78.6
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 5.0e-26 120.6 65 81.5
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 5.0e-26 120.6 60 86.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 5.0e-26 120.6 70 77.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 5.0e-26 120.6 58 89.7
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 5.0e-26 120.6 60 85.0
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 6.5e-26 120.2 96 61.5
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 6.5e-26 120.2 96 61.5
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 6.5e-26 120.2 70 77.1
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 8.5e-26 119.8 61 83.6
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 4.2e-25 117.5 97 59.8
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 4.2e-25 117.5 70 71.4
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 75.7
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 5.5e-25 117.1 70 72.9
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.2e-25 116.7 61 78.7
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 7.2e-25 116.7 57 86.0
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.2e-24 115.9 61 78.7
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.2e-24 115.9 70 74.3
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 2.1e-24 115.2 70 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 2.7e-24 114.8 68 72.1
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 2.7e-24 114.8 70 70.0
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 4.7e-24 114.0 69 71.0
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 4.7e-24 114.0 69 72.5
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 7.9e-24 113.2 70 70.0
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.0e-23 112.8 69 71.0
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.0e-23 112.8 72 69.4
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.0e-23 112.8 67 71.6
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 1.4e-23 112.5 99 57.6
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 6.7e-23 110.2 59 74.6
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 6.7e-23 110.2 67 68.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.5e-22 109.0 70 71.4
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.5e-22 109.0 64 73.4
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.0e-22 108.6 70 70.0
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 3.3e-22 107.8 70 72.9
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.7e-22 107.1 70 68.6
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 9.7e-22 106.3 58 75.9
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.8e-21 104.8 64 71.9
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 2.8e-21 104.8 64 71.9
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.8e-20 102.1 60 73.3
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.1e-20 100.9 60 70.0
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 2.6e-19 98.2 71 62.0
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 2.6e-19 98.2 68 63.2
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.8e-18 94.4 62 62.9
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 8.5e-18 93.2 68 60.3
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.9e-17 92.0 49 71.4
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 7.2e-17 90.1 42 90.5
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 3.6e-16 87.8 41 90.2
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 6.7e-15 83.6 58 60.3
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.3e-13 79.3 43 81.4
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.3e-13 79.3 43 81.4
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.8e-13 77.4 43 76.7
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.4e-12 75.1 51 64.7
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 7.0e-12 73.6 70 52.9
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 1.3e-10 69.3 70 50.0
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 6.5e-10 67.0 34 70.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 2.5e-09 65.1 70 48.6
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.2e-09 64.7 50 58.0
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 3.2e-09 64.7 36 75.0
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.2e-06 56.2 29 89.7


User provided reference genes

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