Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 3.5e-156 555.1 308 100.0
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 1.3e-86 323.9 316 68.7
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 8.5e-70 268.1 315 57.5
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 3.9e-67 259.2 318 55.7
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 5.1e-67 258.8 314 58.0
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 6.7e-67 258.5 320 60.0
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.1e-64 249.6 330 52.7
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.2e-63 247.7 312 57.1
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 4.5e-63 245.7 319 52.7
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 7.7e-63 245.0 319 53.9
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 1.0e-62 244.6 324 54.3
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 3.8e-62 242.7 312 54.2
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 4.7e-60 235.7 314 56.4
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.5e-58 230.7 330 51.5
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 1.5e-58 230.7 330 51.5
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 2.0e-58 230.3 319 53.0
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 2.0e-58 230.3 327 53.2
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 3.3e-58 229.6 328 57.3
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 2.9e-54 216.5 314 53.5
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 5.5e-53 212.2 324 54.3
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 8.3e-49 198.4 320 48.1
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 5.3e-48 195.7 321 46.4
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 3.8e-46 189.5 318 50.6
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 7.2e-45 185.3 324 49.7
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 5.7e-42 175.6 332 47.0
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.8e-40 170.6 328 41.5
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 9.1e-40 168.3 328 41.5
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 1.6e-39 167.5 328 43.3
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 7.7e-39 165.2 360 41.9
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.1e-37 161.4 322 45.7
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 7.2e-37 158.7 331 42.9
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.1e-36 157.1 328 41.5
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 6.8e-35 152.1 330 45.2
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 6.8e-35 152.1 327 44.3
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 8.9e-35 151.8 228 47.8
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.6e-34 150.2 326 43.6
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 2.6e-34 150.2 341 42.5
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 7.5e-34 148.7 328 42.4
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 9.8e-34 148.3 313 39.0
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 6.3e-33 145.6 329 42.2
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.4e-32 144.4 316 45.3
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 1.8e-32 144.1 333 45.3
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 2.4e-32 143.7 320 42.5
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 5.4e-32 142.5 318 40.3
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 7.0e-32 142.1 336 42.9
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 9.2e-32 141.7 319 45.8
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.2e-31 141.4 330 42.1
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.7e-30 137.5 223 46.6
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 2.0e-26 124.0 330 42.4
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 2.0e-26 124.0 236 42.8
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 2.6e-26 123.6 319 38.2
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 3.4e-26 123.2 330 41.5
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 5.8e-26 122.5 312 37.2
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 1.7e-25 120.9 325 39.7
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 1.4e-24 117.9 340 31.5
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 7.0e-24 115.5 372 33.9
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 9.2e-24 115.2 225 38.2
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 1.2e-23 114.8 342 33.0
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 2.7e-23 113.6 340 34.4
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 2.3e-22 110.5 381 34.4
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.0e-22 110.2 344 33.1
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 3.9e-22 109.8 338 34.0
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 2.5e-21 107.1 342 32.2
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 2.5e-21 107.1 315 40.3
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 7.3e-21 105.5 348 32.5
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 1.2e-20 104.8 342 31.9
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.6e-20 104.4 342 31.0
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.4e-19 101.3 161 50.3
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.4e-19 101.3 237 36.7
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.8e-19 100.9 163 46.6
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 5.2e-19 99.4 345 37.7
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 8.9e-19 98.6 169 46.7
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 2.6e-18 97.1 358 34.9
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 3.4e-18 96.7 358 33.0
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 5.8e-18 95.9 317 38.2
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 7.5e-18 95.5 293 38.2
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.3e-17 94.7 352 31.5
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 8.3e-17 92.0 326 29.8
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 3.2e-16 90.1 331 36.6
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 4.1e-16 89.7 350 30.3
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 4.1e-16 89.7 350 30.3
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 7.0e-16 89.0 350 30.3
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 7.0e-16 89.0 204 39.2
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 5.1e-14 82.8 183 38.3
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.5e-13 81.3 188 40.4
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 2.3e-11 73.9 419 28.6
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 3.1e-11 73.6 379 30.6
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 8.9e-11 72.0 194 34.5
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 6.4e-09 65.9 317 26.8
PSO170G2045 Papaver somniferum HOM05D047919 ORTHO05D050194 7.8e-07 58.9 257 29.2


User provided reference genes

Program Settings