Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 2.0e-59 232.3 122 100.0
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 1.2e-56 223.0 122 94.3
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 4.4e-54 214.5 122 89.3
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 3.7e-53 211.5 122 89.3
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 6.4e-53 210.7 122 88.5
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 8.3e-53 210.3 122 87.7
Potri.019G066600 Populus trichocarpa HOM05D006317 ORTHO05D007852 1.1e-52 209.9 121 90.1
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 2.4e-52 208.8 122 86.9
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 3.2e-52 208.4 122 86.1
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 3.2e-52 208.4 122 86.1
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 9.2e-52 206.8 122 85.2
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 1.6e-51 206.1 122 86.9
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 3.5e-51 204.9 122 85.2
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 3.5e-51 204.9 122 82.8
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 3.5e-51 204.9 120 85.8
CANSAT35G0412 Cannabis sativa HOM05D006317 ORTHO05D007852 4.6e-51 204.5 122 86.1
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 4.6e-51 204.5 122 85.2
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 6.0e-51 204.1 122 84.4
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 6.0e-51 204.1 120 89.2
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 6.0e-51 204.1 122 85.2
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.3e-50 203.0 120 85.8
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.3e-50 203.0 122 86.9
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.3e-50 203.0 122 86.9
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 1.3e-50 203.0 122 86.9
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 2.3e-50 202.2 122 85.2
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 3.9e-50 201.4 122 84.4
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 6.6e-50 200.7 120 85.0
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 6.6e-50 200.7 122 84.4
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 8.6e-50 200.3 122 84.4
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 8.6e-50 200.3 122 84.4
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 8.6e-50 200.3 120 86.7
Ciclev10002865m.g Citrus clementina HOM05D006317 ORTHO05D007852 1.1e-49 199.9 122 82.8
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 1.1e-49 199.9 122 84.4
ECA246G3352 Erigeron canadensis HOM05D006317 ORTHO05D007852 1.1e-49 199.9 122 85.2
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 1.9e-49 199.1 122 83.6
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.3e-49 198.4 122 83.6
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 4.3e-49 198.0 122 83.6
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 5.6e-49 197.6 122 82.8
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 7.3e-49 197.2 122 81.1
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 7.3e-49 197.2 122 79.5
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 1.2e-48 196.4 121 83.5
Sed0014816 Sechium edule HOM05D006317 ORTHO05D007852 1.2e-48 196.4 122 83.6
Aqoxy1G01739 Aquilegia oxysepala HOM05D006317 ORTHO05D007852 2.8e-48 195.3 122 82.0
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.8e-48 195.3 122 82.0
Oeu051968.1 Olea europaea HOM05D006317 ORTHO05D007852 8.0e-48 193.7 122 80.3
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 8.0e-48 193.7 120 82.5
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 1.4e-47 193.0 122 81.1
MSTRG.25364 Avicennia marina HOM05D006317 ORTHO05D007852 2.3e-47 192.2 120 79.2
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 2.3e-47 192.2 120 81.7
Peaxi162Scf01003g00121 Petunia axillaris HOM05D006317 ORTHO05D007852 2.3e-47 192.2 122 78.7
Cc10_g12550 Coffea canephora HOM05D006317 ORTHO05D007852 6.8e-47 190.7 120 80.8
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 6.8e-47 190.7 120 82.5
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 8.9e-47 190.3 120 81.7
Actinidia29484 Actinidia chinensis HOM05D006317 ORTHO05D007852 1.2e-46 189.9 119 81.5
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 1.2e-46 189.9 121 81.0
Lsat_1_v5_gn_6_109060 Lactuca sativa HOM05D006317 ORTHO05D007852 1.5e-46 189.5 122 80.3
Oeu021883.1 Olea europaea HOM05D006317 ORTHO05D007852 2.0e-46 189.1 122 77.9
Nitab4.5_0002045g0100 Nicotiana tabacum HOM05D006317 ORTHO05D007852 3.4e-46 188.3 122 76.2
Sabra19G0078300 Salix brachista HOM05D006317 ORTHO05D007852 4.4e-46 188.0 135 77.0
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 9.8e-46 186.8 122 78.7
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 9.8e-46 186.8 120 79.2
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 9.8e-46 186.8 120 80.8
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 78.7
Nitab4.5_0001168g0010 Nicotiana tabacum HOM05D006317 ORTHO05D007852 1.3e-45 186.4 122 76.2
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 1.7e-45 186.0 120 80.0
arahy.Tifrunner.gnm1.ann1.0GY0RD Arachis hypogaea HOM05D006317 ORTHO05D007852 2.2e-45 185.7 119 82.4
arahy.Tifrunner.gnm1.ann1.ID1H8K Arachis hypogaea HOM05D006317 ORTHO05D007852 2.2e-45 185.7 119 82.4
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 2.9e-45 185.3 172 61.6
CAN.G342.14 Capsicum annuum HOM05D006317 ORTHO05D007852 3.7e-45 184.9 122 76.2
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 4.9e-45 184.5 123 78.9
unitig_22.g5398 Utricularia gibba HOM05D006317 ORTHO05D007852 4.9e-45 184.5 120 80.8
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 6.4e-45 184.1 122 77.9
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 6.4e-45 184.1 122 77.9
CDE06G2198 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 8.3e-45 183.7 122 77.0
Psat5g085080 Pisum sativum HOM05D006317 ORTHO05D007852 1.4e-44 183.0 120 79.2
Solyc11g005000.2 Solanum lycopersicum HOM05D006317 ORTHO05D007852 1.9e-44 182.6 122 76.2
Migut.N03266 Erythranthe guttata HOM05D006317 ORTHO05D007852 3.2e-44 181.8 122 78.7
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 7.1e-44 180.6 122 76.2
PGSC0003DMG400006049 Solanum tuberosum HOM05D006317 ORTHO05D007852 9.2e-44 180.3 122 75.4
Ah.01g020580 Amaranthus hybridus HOM05D006317 ORTHO05D007852 3.5e-43 178.3 122 73.8
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 3.5e-43 178.3 122 74.6
Sopen11g001020 Solanum pennellii HOM05D006317 ORTHO05D007852 3.5e-43 178.3 122 74.6
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 4.6e-43 177.9 123 76.4
CDE07G1891 Ceratophyllum demersum HOM05D006317 ORTHO05D007852 6.0e-43 177.6 122 77.0
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 7.8e-43 177.2 122 73.0
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 1.0e-42 176.8 122 73.8
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 1.0e-42 176.8 122 73.8
SHI09189 Sapria himalayana HOM05D006317 ORTHO05D007852 1.3e-42 176.4 131 71.0
unitig_8.g3836 Utricularia gibba HOM05D006317 ORTHO05D007852 1.3e-42 176.4 120 75.8
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 1.7e-42 176.0 122 72.1
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 1.7e-42 176.0 122 73.8
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 2.3e-42 175.6 122 72.1
HanXRQChr05g0148711 Helianthus annuus HOM05D006317 ORTHO05D007852 6.6e-42 174.1 115 78.3
AUR62016336 Chenopodium quinoa HOM05D006317 ORTHO05D007852 1.1e-41 173.3 122 72.1
SalBow2G0856 Salvia bowleyana HOM05D006317 ORTHO05D007852 1.5e-41 172.9 120 75.8
SGA_v2.0_scaffold25G11134 Striga asiatica HOM05D006317 ORTHO05D007852 3.3e-41 171.8 109 80.7
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 7.3e-41 170.6 122 73.0
Zm00001eb128810 Zea mays HOM05D006317 ORTHO05D007852 2.1e-40 169.1 122 70.5
HPP92_021212 Vanilla planifolia HOM05D006317 ORTHO05D007852 2.8e-40 168.7 122 71.3
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 6.2e-40 167.5 122 70.5
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 6.2e-40 167.5 121 71.9
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 6.2e-40 167.5 121 71.9
Os05g0486200 Oryza sativa ssp. japonica HOM05D006317 ORTHO05D007852 6.2e-40 167.5 118 72.0
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 1.1e-39 166.8 148 64.9
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 1.1e-39 166.8 121 71.9
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 1.1e-39 166.8 121 71.9
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 1.4e-39 166.4 123 71.5
FAN27G3154 Fragaria x ananassa HOM05D006317 ORTHO05D007852 4.9e-37 157.9 91 87.9
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 1.9e-36 156.0 91 87.9
AagrBONN_evm.TU.Sc2ySwM_344.4689 Anthoceros agrestis HOM05D006317 ORTHO05D007852 7.8e-35 150.6 119 63.0
Mapoly0014s0111 Marchantia polymorpha HOM05D006317 ORTHO05D007852 1.3e-34 149.8 115 63.5
vmacro16444 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 7.3e-33 144.1 94 80.9
vmacro00858 Vaccinium macrocarpon HOM05D006317 ORTHO05D007852 8.1e-32 140.6 97 77.3
CBR_g12067 Chara braunii HOM05D006317 ORTHO05D007852 8.9e-31 137.1 103 67.0
EL10Ac9g21899 Beta vulgaris HOM05D006317 ORTHO05D007852 5.8e-30 134.4 91 75.8
SMO298G0052 Selaginella moellendorffii HOM05D006317 ORTHO05D007852 1.3e-29 133.3 101 66.3
Nn7g37402 Nelumbo nucifera HOM05D006317 ORTHO05D007852 3.3e-25 118.6 70 81.4
BcaB03g14260 Brassica carinata HOM05D006317 ORTHO05D007852 5.6e-25 117.9 126 54.8
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 1.4e-23 113.2 68 85.3
Haze_17997 Corylus avellana HOM05D001650 ORTHO05D001592 4.4e-22 108.2 123 48.0
Gohir.A02G071601 Gossypium hirsutum HOM05D006317 ORTHO05D007852 1.9e-17 92.8 58 86.2
CSS0043705 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 4.9e-13 78.2 45 80.0
SGA_v2.0_scaffold28G11977 Striga asiatica HOM05D006317 ORTHO05D007852 4.2e-12 75.1 52 78.8
QL05p046423 Quercus lobata HOM05D006317 ORTHO05D007852 2.1e-11 72.8 51 70.6
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 5.1e-10 68.2 52 73.1
FAN15G1039 Fragaria x ananassa HOM05D006317 ORTHO05D007852 9.6e-09 63.9 37 75.7
BcaC05g26083 Brassica carinata HOM05D006317 ORTHO05D007852 3.4e-06 55.5 42 69.0


User provided reference genes

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