Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 1.1e-50 203.0 98 100.0
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.4e-47 192.6 98 91.8
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 5.5e-47 190.7 98 92.9
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 1.3e-45 186.0 98 90.8
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.8e-45 185.7 98 88.8
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 3.0e-45 184.9 98 88.8
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 5.1e-45 184.1 98 88.8
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 5.1e-45 184.1 98 84.7
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 8.7e-45 183.3 98 84.7
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 1.1e-44 183.0 98 86.7
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.3e-44 181.0 98 88.8
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 5.7e-44 180.6 98 87.8
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.3e-43 179.5 96 88.5
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.8e-43 178.3 98 86.7
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.7e-43 177.9 98 83.7
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 4.8e-43 177.6 98 83.7
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.3e-43 177.2 98 83.7
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.4e-42 176.0 98 83.7
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.4e-42 176.0 98 83.7
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.8e-42 175.6 98 87.8
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.5e-41 172.6 99 81.8
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.0e-41 172.2 98 80.6
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 4.5e-41 171.0 98 81.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 5.0e-40 167.5 97 80.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 1.1e-39 166.4 98 80.6
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.9e-39 165.6 97 78.4
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 5.5e-39 164.1 86 88.4
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 1.2e-38 162.9 95 80.0
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 3.6e-38 161.4 95 78.9
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 6.1e-38 160.6 95 78.9
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 3.9e-37 157.9 99 78.8
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 5.1e-37 157.5 95 77.9
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 8.8e-37 156.8 86 87.2
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.1e-36 156.4 98 75.5
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.0e-36 155.6 86 83.7
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.5e-36 155.2 98 78.6
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.3e-36 154.5 99 76.8
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 5.7e-36 154.1 98 74.5
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 9.7e-36 153.3 98 73.5
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.7e-35 152.5 86 81.4
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 3.7e-35 151.4 98 71.4
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 4.8e-35 151.0 98 70.4
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 8.2e-35 150.2 98 71.4
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 8.2e-35 150.2 98 72.4
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 8.2e-35 150.2 98 72.4
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 8.2e-35 150.2 98 69.4
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 8.2e-35 150.2 95 76.8
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.8e-34 149.1 98 71.4
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.8e-34 149.1 98 72.4
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 3.1e-34 148.3 98 70.4
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 5.3e-34 147.5 100 72.0
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 6.9e-34 147.1 98 70.4
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 6.9e-34 147.1 98 69.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 9.1e-34 146.7 98 65.3
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.2e-33 146.4 86 81.4
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 2.0e-33 145.6 100 69.0
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 3.4e-33 144.8 107 66.4
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 4.5e-33 144.4 98 70.4
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.0e-32 143.3 97 71.1
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.0e-32 143.3 86 80.2
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.3e-32 142.9 98 72.4
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 1.7e-32 142.5 98 64.3
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 6.5e-32 140.6 97 64.9
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 6.5e-32 140.6 98 67.3
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.1e-31 139.8 107 64.5
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.4e-31 139.4 98 65.3
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 2.5e-31 138.7 99 67.7
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.2e-31 138.3 98 66.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 3.2e-31 138.3 97 70.1
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 5.5e-31 137.5 98 63.3
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.1e-30 135.6 86 76.7
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 2.7e-30 135.2 98 66.3
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 3.6e-30 134.8 99 68.7
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 3.6e-30 134.8 98 65.3
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 4.7e-30 134.4 98 62.2
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 4.7e-30 134.4 87 75.9
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 7.9e-30 133.7 75 86.7
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 1.0e-29 133.3 98 63.3
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.8e-29 132.5 99 66.7
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.8e-29 132.5 98 67.3
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 2.3e-29 132.1 134 52.2
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 2.3e-29 132.1 86 75.6
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 2.3e-29 132.1 98 67.3
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 5.1e-29 131.0 86 72.1
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 3.3e-28 128.3 86 70.9
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 4.4e-28 127.9 88 75.0
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 4.4e-28 127.9 94 62.8
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 7.4e-28 127.1 86 67.4
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.7e-27 125.9 99 62.6
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 2.2e-27 125.6 99 61.6
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 2.2e-27 125.6 84 70.2
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.2e-27 125.6 88 70.5
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 4.1e-26 121.3 102 62.7
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 7.0e-26 120.6 100 58.0
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 9.1e-26 120.2 86 62.8
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.5e-25 119.4 92 60.9
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 5.9e-25 117.5 87 66.7
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 7.7e-25 117.1 86 64.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 1.7e-24 115.9 99 56.6
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 2.9e-24 115.2 101 57.4
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.5e-23 112.8 88 61.4
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 2.5e-23 112.1 105 53.3
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 3.2e-23 111.7 86 59.3
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 5.5e-23 110.9 82 62.2
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.2e-22 109.8 102 54.9
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 1.6e-22 109.4 105 53.3
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 3.6e-22 108.2 103 52.4
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 4.7e-22 107.8 105 57.1
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 4.7e-22 107.8 100 51.0
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 4.7e-22 107.8 104 52.9
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 6.1e-22 107.5 102 54.9
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 6.1e-22 107.5 98 56.1
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 6.1e-22 107.5 69 69.6
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 8.0e-22 107.1 75 72.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 5.2e-21 104.4 104 51.9
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.1e-20 103.2 107 48.6
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 2.0e-20 102.4 109 47.7
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 4.4e-20 101.3 83 60.2
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 4.1e-18 94.7 60 76.7
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 4.1e-18 94.7 58 72.4
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 5.3e-18 94.4 75 58.7
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 5.9e-17 90.9 82 53.7
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 5.5e-15 84.3 91 49.5
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 5.5e-15 84.3 91 49.5
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.7e-14 82.0 83 51.8
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.0e-12 75.9 53 64.2
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 1.3e-11 73.2 53 62.3
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 6.3e-11 70.9 70 55.7
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.8e-10 69.3 53 56.6
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 7.0e-10 67.4 77 44.2
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 7.0e-10 67.4 77 44.2
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 9.1e-10 67.0 62 51.6
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 7.7e-09 63.9 49 55.1
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 2.9e-08 62.0 47 63.8
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 1.5e-07 59.7 51 54.9
COL.COLO4_22630 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.9e-07 59.3 33 84.8
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 6.1e-06 54.3 41 58.5


User provided reference genes

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