Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.1e-181 639.8 321 100.0
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.4e-146 521.9 323 80.5
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 7.8e-143 510.8 323 78.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.9e-141 506.1 324 77.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 9.6e-141 503.8 322 78.6
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-139 500.0 323 77.7
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.3e-137 493.4 327 75.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 3.8e-137 491.9 324 74.7
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 6.4e-137 491.1 307 79.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.1e-136 490.3 337 73.3
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.4e-136 489.2 307 78.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 3.2e-136 488.8 305 78.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-135 486.9 306 80.7
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 2.1e-135 486.1 306 80.7
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.7e-135 485.7 306 80.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.0e-134 483.8 320 75.0
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.1e-134 481.5 324 74.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 2.5e-133 479.2 324 73.8
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.3e-133 478.8 324 72.8
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 7.3e-133 477.6 312 76.6
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 7.3e-133 477.6 317 74.4
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.3e-132 476.9 310 77.1
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.6e-132 476.5 315 74.3
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 2.8e-132 475.7 324 71.9
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.3e-131 471.5 312 73.1
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 5.3e-131 471.5 313 74.4
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 6.9e-131 471.1 310 74.2
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 9.0e-131 470.7 324 72.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-130 470.3 310 74.8
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.5e-130 468.4 310 72.9
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.8e-130 468.0 324 71.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 1.3e-129 466.8 310 74.2
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 3.8e-129 465.3 327 70.6
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.4e-129 464.2 310 73.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 8.4e-129 464.2 313 71.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-128 463.8 312 74.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.1e-128 463.8 316 71.5
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.9e-128 463.0 304 75.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.4e-128 462.6 305 74.4
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.4e-128 462.6 312 73.7
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 4.2e-128 461.8 317 74.1
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.4e-128 461.5 322 69.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.4e-128 461.5 308 73.1
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 7.1e-128 461.1 276 82.6
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.6e-127 459.9 320 71.2
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 3.5e-127 458.8 321 70.7
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.5e-127 458.8 309 72.5
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.0e-127 458.0 321 70.1
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.0e-127 458.0 307 73.6
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.9e-127 457.6 307 74.6
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.0e-126 457.2 350 68.9
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.0e-126 457.2 304 74.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.0e-126 457.2 316 70.9
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 3.9e-126 455.3 324 71.6
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 5.1e-126 454.9 321 68.5
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.5e-125 453.4 309 72.5
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 1.9e-125 453.0 315 71.1
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.9e-125 453.0 322 69.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.3e-125 451.8 351 66.7
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 2.1e-124 449.5 319 69.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-124 449.5 324 69.8
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 4.8e-124 448.4 326 69.9
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.1e-123 447.2 311 69.8
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.4e-123 446.8 309 71.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.4e-123 446.8 338 67.8
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 3.1e-123 445.7 331 68.6
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 4.0e-123 445.3 323 69.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.5e-122 441.8 317 71.3
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 4.5e-122 441.8 318 69.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.5e-122 441.8 310 71.3
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.2e-121 439.5 321 67.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 2.9e-121 439.1 321 66.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.8e-121 438.7 333 66.7
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 8.4e-121 437.6 313 68.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.4e-121 437.6 321 70.7
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.5e-120 436.0 274 78.8
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.1e-119 433.0 317 66.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.1e-119 433.0 308 68.2
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 3.5e-119 432.2 316 67.1
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.5e-119 432.2 392 59.2
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.6e-119 431.8 307 71.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.8e-118 429.9 318 66.4
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 5.1e-118 428.3 306 70.3
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.9e-117 426.4 318 66.7
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.8e-116 422.5 356 61.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-115 420.6 318 66.4
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-115 419.1 275 73.8
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.0e-115 418.7 338 63.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 5.3e-115 418.3 318 66.0
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-115 417.9 325 67.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 9.0e-115 417.5 291 69.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.0e-113 414.1 313 65.8
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-113 413.3 275 72.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.2e-113 412.9 309 65.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.2e-113 412.9 309 69.6
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 6.5e-113 411.4 311 65.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.1e-112 410.6 318 64.5
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.5e-112 409.5 273 72.9
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.2e-112 409.1 275 74.5
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 5.5e-112 408.3 292 69.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.1e-111 406.4 284 70.8
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.1e-111 406.4 307 64.5
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 3.5e-111 405.6 317 64.0
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 3.5e-111 405.6 307 64.5
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.1e-109 400.6 335 60.6
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 5.7e-109 398.3 317 62.8
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.2e-106 390.6 266 73.7
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.2e-104 382.1 305 65.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 3.6e-103 379.0 325 62.2
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 3.0e-102 375.9 247 73.7
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.3e-101 372.1 303 62.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.7e-101 371.7 241 72.6
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 5.7e-101 371.7 324 59.0
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 7.4e-101 371.3 304 61.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 9.7e-101 370.9 310 60.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.3e-99 365.2 307 60.3
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 5.0e-97 358.6 303 56.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.0e-97 358.6 314 59.9
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-96 357.1 323 59.1
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.9e-96 356.7 307 58.6
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.5e-96 356.3 303 61.7
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-94 350.9 278 64.4
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.3e-94 349.7 308 61.4
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 5.7e-93 345.1 229 74.7
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.0e-89 334.3 447 46.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.6e-87 327.0 232 68.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.5e-80 303.1 302 55.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.2e-79 300.8 199 71.9
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.6e-71 273.9 312 48.7
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 3.6e-71 272.7 172 80.2
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.0e-71 271.6 223 64.6
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.0e-70 269.6 186 73.1
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.7e-66 255.0 352 42.3
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-65 254.2 216 63.9
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.5e-64 248.8 164 72.6
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 5.2e-62 242.3 221 57.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 6.8e-62 241.9 186 65.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 8.9e-62 241.5 164 72.6
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.6e-61 240.0 148 79.7
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 2.8e-60 236.5 173 69.4
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.8e-59 233.8 273 48.0
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 9.2e-59 231.5 273 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.0e-58 230.3 193 57.0
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 7.8e-58 228.4 170 67.1
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.6e-57 224.9 232 55.2
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.4e-53 213.0 180 62.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 3.4e-53 213.0 142 76.1
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-52 211.1 196 57.7
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 6.4e-52 208.8 138 71.7
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 7.8e-50 201.8 286 41.6
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.3e-49 200.3 132 75.0
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.9e-49 199.5 218 49.1
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.1e-46 191.4 333 41.4
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 6.4e-44 182.2 120 70.8
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.2e-42 177.9 117 70.9
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.2e-42 177.9 149 62.4
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-40 170.2 182 51.6
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.4e-38 164.5 166 46.4
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 6.4e-36 155.6 106 74.5
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-33 147.5 150 54.0
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 3.8e-28 129.8 113 61.9
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.5e-26 123.2 125 52.0
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-25 120.9 116 56.9
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.8e-21 105.9 83 63.9
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-20 103.6 67 71.6
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 2.4e-19 100.5 83 63.9
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.5e-18 96.7 90 57.8
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.4e-14 84.0 65 64.6
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.0e-13 80.9 96 45.8
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.0e-13 80.9 65 63.1
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.4e-12 75.9 44 81.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.4e-11 73.9 88 44.3
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 4.3e-08 63.2 55 58.2
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 4.8e-07 59.7 36 75.0
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 6.2e-07 59.3 34 79.4
TPR.G17539 Trifolium pratense HOM05D003898 ORTHO05D411187 2.4e-06 57.4 36 72.2
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 5.3e-06 56.2 40 67.5


User provided reference genes

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