Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 2002.6 1011 100.0
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1685.6 1006 85.1
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1602.0 1012 79.4
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1589.7 1011 78.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1577.8 1012 78.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1565.1 1010 77.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1561.2 1005 77.2
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1560.4 1012 77.3
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1559.3 1013 77.3
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1553.1 1007 76.7
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1544.6 1025 75.8
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1533.9 1009 76.1
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1529.6 1012 75.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1526.9 1007 74.9
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1526.5 1007 75.2
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1515.0 1032 73.5
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1510.0 1011 74.9
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1504.6 1008 75.1
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1503.8 1011 75.3
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1501.1 1009 75.1
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1500.7 1015 74.9
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1500.0 1032 72.7
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1499.6 1043 72.4
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1494.9 1025 73.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1494.6 1019 73.7
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1491.5 1018 74.4
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1491.5 1006 74.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1490.7 1019 73.7
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1489.6 1019 73.6
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1486.1 1014 74.2
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1484.5 1022 72.9
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1483.8 965 77.2
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1478.8 1019 72.6
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1475.3 1019 73.5
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1011 73.8
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1474.5 1016 72.3
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1015 74.2
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1014 73.2
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1463.0 1011 73.3
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1453.0 1022 73.0
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1444.9 1015 71.7
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1442.9 1013 72.2
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1442.2 1012 71.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1438.7 1007 71.7
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1436.0 1016 71.6
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1435.6 1021 72.5
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1054 69.7
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1434.5 1012 71.8
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1432.9 1015 71.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 1016 71.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1430.2 1016 71.0
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1429.8 930 78.2
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1016 70.8
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1427.2 1014 71.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1424.8 1015 71.0
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1424.5 1015 71.0
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1424.1 1015 70.9
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1422.9 1015 70.9
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1421.0 1017 71.6
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1419.1 1015 70.7
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1418.7 1011 70.2
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1417.9 1026 69.9
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1034 69.5
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1416.7 1014 70.2
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1414.1 1014 70.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1412.5 977 74.1
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1409.0 1046 68.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1407.5 1030 69.6
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1407.5 1011 70.2
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1398.3 1090 67.9
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 1008 70.3
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1396.7 1013 70.1
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1395.6 987 71.3
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 1012 69.5
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 971 72.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1385.5 1031 69.5
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1012 70.0
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 1016 70.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1358.6 1018 68.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1349.3 1013 67.0
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1022 66.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1345.9 1018 67.9
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 1018 66.6
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1331.2 1027 67.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1331.2 1112 63.3
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1328.9 1006 68.1
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1328.9 1013 68.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1326.6 987 68.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1318.9 1011 67.3
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1016 66.3
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1308.1 1043 65.3
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1303.5 1031 65.1
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1299.3 1018 64.6
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1286.9 984 67.2
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1285.8 1015 66.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1282.3 1012 66.4
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1280.0 1036 65.1
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1276.2 970 68.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1260.7 1013 65.4
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1256.1 1146 58.6
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1253.8 1009 65.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1250.7 921 69.3
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 1179 57.2
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1240.3 863 73.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1033 62.6
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1233.0 947 67.5
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1227.2 1013 64.8
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1213.7 1016 63.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1048 61.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1204.1 1015 62.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1013 62.2
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1199.5 1006 60.7
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1194.5 1008 60.7
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1172.5 1013 61.4
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 1010 58.8
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1142.5 864 67.8
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1131.3 990 62.4
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1130.9 812 71.8
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1107.4 913 64.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1105.9 942 60.3
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 2.5e-296 1022.3 947 57.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.9e-280 969.5 866 59.4
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 6.3e-271 937.9 1035 50.5
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.9e-268 929.1 786 63.4
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.3e-265 920.2 1034 48.9
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.0e-260 904.0 629 73.8
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.7e-258 896.0 625 73.3
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.3e-252 877.1 986 49.0
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 7.5e-240 834.7 648 67.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 7.0e-238 828.2 1022 46.1
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 6.1e-234 815.1 1024 45.1
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 3.6e-226 789.3 627 64.3
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 7.3e-219 765.0 1230 40.1
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.3e-217 760.0 887 45.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 2.2e-183 647.1 392 82.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 3.4e-176 623.2 360 83.9
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 4.9e-175 619.4 390 81.5
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-156 557.4 462 64.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 1.1e-153 548.5 482 63.3
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.4e-150 538.1 556 52.3
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-141 508.4 531 52.7
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.8e-111 407.1 238 85.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.3e-103 381.3 259 74.9
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.3e-100 371.3 304 63.5
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.4e-97 362.1 205 79.5
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.9e-89 335.1 240 70.8
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.4e-83 313.9 238 70.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 6.0e-80 303.5 829 29.8
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.9e-73 282.0 162 79.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.6e-71 273.5 150 83.3
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 1.1e-57 229.6 174 63.2
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 1.4e-57 229.2 294 51.0
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.0e-56 223.8 283 49.8
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.4e-52 212.6 148 77.0
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.9e-46 192.2 483 31.1
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 7.4e-46 190.3 114 75.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 3.5e-40 171.4 221 48.0
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-39 169.5 148 58.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 6.7e-39 167.2 90 77.8
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 2.8e-37 161.8 136 64.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 4.3e-30 137.9 132 57.6
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.4e-28 132.1 77 77.9
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 4.1e-28 131.3 88 65.9
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 5.0e-26 124.4 125 53.6
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 1.2e-24 119.8 79 74.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.6e-22 112.1 96 58.3
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.5e-19 102.8 77 66.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.5e-19 102.8 77 66.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.5e-19 102.8 77 66.2
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 5.5e-17 94.4 81 63.0
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.8e-15 89.4 67 58.2
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-11 76.6 46 78.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 4.5e-11 74.7 77 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.9e-11 74.3 50 70.0
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 5.5e-09 67.8 70 58.6
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 6.1e-08 64.3 65 49.2


User provided reference genes

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