Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G146550 Manihot esculenta HOM05D000481 ORTHO05D003804 1.4e-30 135.6 66 100.0
Manes.06G152000 Manihot esculenta HOM05D000481 ORTHO05D003804 3.3e-19 97.8 54 85.2
Hund09776 Selenicereus undatus HOM05D000481 ORTHO05D003804 2.1e-18 95.1 54 81.5
Ah.07g206600 Amaranthus hybridus HOM05D000481 ORTHO05D003804 2.8e-18 94.7 54 81.5
Glyma.16G179500 Glycine max HOM05D000481 ORTHO05D003804 4.7e-18 94.0 54 79.6
Phvul.004G109400 Phaseolus vulgaris HOM05D000481 ORTHO05D003804 4.7e-18 94.0 54 79.6
Atru.chr1.380 Acer truncatum HOM05D000481 ORTHO05D003804 6.1e-18 93.6 54 81.5
Atru.ctg97_1.15 Acer truncatum HOM05D000481 ORTHO05D003804 6.1e-18 93.6 54 81.5
CANSAT21G1604 Cannabis sativa HOM05D000481 ORTHO05D003804 6.1e-18 93.6 54 79.6
Lalb_Chr03g0034801 Lupinus albus HOM05D000481 ORTHO05D003804 8.0e-18 93.2 54 79.6
VMungo0464G1795 Vigna mungo HOM05D000481 ORTHO05D003804 8.0e-18 93.2 54 79.6
Sed0024355 Sechium edule HOM05D000481 ORTHO05D003804 1.0e-17 92.8 54 79.6
TWI23G0935 Tripterygium wilfordii HOM05D000481 ORTHO05D003804 1.0e-17 92.8 54 79.6
Eucgr.K00293 Eucalyptus grandis HOM05D000481 ORTHO05D003804 1.4e-17 92.4 54 77.8
Medtr6g048290 Medicago truncatula HOM05D000481 ORTHO05D003804 1.4e-17 92.4 54 79.6
Dinv35248 Davidia involucrata HOM05D000481 ORTHO05D003804 1.8e-17 92.0 54 77.8
Glyma.09G132800 Glycine max HOM05D000481 ORTHO05D003804 1.8e-17 92.0 54 77.8
Lj8C18G16 Lonicera japonica HOM05D000481 ORTHO05D003804 1.8e-17 92.0 54 77.8
SGA_v2.0_scaffold10G05297 Striga asiatica HOM05D000481 ORTHO05D003804 1.8e-17 92.0 54 75.9
TPR.G33499 Trifolium pratense HOM05D000481 ORTHO05D003804 1.8e-17 92.0 54 77.8
arahy.Tifrunner.gnm1.ann1.AH10MI Arachis hypogaea HOM05D000481 ORTHO05D003804 2.3e-17 91.7 54 79.6
arahy.Tifrunner.gnm1.ann1.LAZQ16 Arachis hypogaea HOM05D000481 ORTHO05D003804 2.3e-17 91.7 54 79.6
MSTRG.75 Avicennia marina HOM05D000481 ORTHO05D003804 2.3e-17 91.7 54 74.1
Cc02_g02430 Coffea canephora HOM05D000481 ORTHO05D003804 2.3e-17 91.7 54 75.9
CSS0027480 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 77.8
CSS0035045 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 77.8
CiPaw.06G003000 Carya illinoinensis HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 77.8
COL.COLO4_10061 Corchorus olitorius HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 77.8
Lj2g0019584 Lotus japonicus HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 77.8
PGR042G0787 Punica granatum HOM05D000481 ORTHO05D003804 3.0e-17 91.3 54 75.9
ClCG05G008330 Citrullus lanatus HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
MELO3C006941.2 Cucumis melo HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
CsaV3_3G017420 Cucumis sativus L. HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
Duzib084G1260 Durio zibethinus HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
Hma1.2p1_0274F.1_g110190 Hydrangea macrophylla HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
Lalb_Chr19g0130681 Lupinus albus HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 75.9
Sed0008621 Sechium edule HOM05D000481 ORTHO05D003804 4.0e-17 90.9 54 77.8
Ca_20084_v3 Cicer arietinum L. HOM05D000481 ORTHO05D003804 5.2e-17 90.5 52 80.8
EL10Ac3g05429 Beta vulgaris HOM05D000481 ORTHO05D003804 6.8e-17 90.1 52 78.8
Cpa.g.sc107.103 Carica papaya HOM05D000481 ORTHO05D003804 6.8e-17 90.1 54 77.8
Thhalv10026072m.g Eutrema salsugineum HOM05D000481 ORTHO05D003804 6.8e-17 90.1 54 74.1
TWI39G0643 Tripterygium wilfordii HOM05D000481 ORTHO05D003804 6.8e-17 90.1 54 77.8
Ah.13g069140 Amaranthus hybridus HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 74.1
AT4G25680 Arabidopsis thaliana HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 72.2
AUR62021128 Chenopodium quinoa HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 74.1
THA.LOC104811960 Tarenaya hassleriana HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 72.2
Thecc.03G183500 Theobroma cacao HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 74.1
TAR374G1275 Trochodendron aralioides HOM05D000481 ORTHO05D003804 8.9e-17 89.7 54 75.9
CSS0034028 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
CSS0043947 Camellia sinensis var. sinensis HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FvH4_7g30180 Fragaria vesca HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FAN01G0907 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FAN03G1133 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FAN03G1262 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FAN06G0755 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
FAN06G2535 Fragaria x ananassa HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 75.9
HanXRQChr05g0130131 Helianthus annuus HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 77.8
Solyc03g008010.3 Solanum lycopersicum HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 74.1
Sopen03g003940 Solanum pennellii HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 74.1
PGSC0003DMG400010126 Solanum tuberosum HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 74.1
THA.LOC104825111 Tarenaya hassleriana HOM05D000481 ORTHO05D003804 1.2e-16 89.4 54 72.2
BcaNung07306 Brassica carinata HOM05D000481 ORTHO05D003804 1.5e-16 89.0 54 70.4
C01p21220 Brassica napus HOM05D000481 ORTHO05D003804 1.5e-16 89.0 54 70.4
BolC1t02048H Brassica oleracea HOM05D000481 ORTHO05D003804 1.5e-16 89.0 54 70.4
AUR62031416 Chenopodium quinoa HOM05D000481 ORTHO05D003804 1.5e-16 89.0 54 74.1
Duzib068G1295 Durio zibethinus HOM05D000481 ORTHO05D003804 1.5e-16 89.0 54 74.1
CAN.G126.11 Capsicum annuum HOM05D000481 ORTHO05D003804 2.0e-16 88.6 54 72.2
Nn6g33308 Nelumbo nucifera HOM05D000481 ORTHO05D003804 2.0e-16 88.6 54 74.1
Prupe.2G300300 Prunus persica HOM05D000481 ORTHO05D003804 2.0e-16 88.6 54 72.2
BcaC07g38206 Brassica carinata HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 70.4
A08p21020 Brassica napus HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 70.4
C08p09610 Brassica napus HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 70.4
BolC8t48629H Brassica oleracea HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 70.4
BraA08t34054Z Brassica rapa HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 70.4
Dinv28391 Davidia involucrata HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 74.1
FAN10G0986 Fragaria x ananassa HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 75.9
FAN10G2649 Fragaria x ananassa HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 75.9
PGR142G2800 Punica granatum HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 75.9
RcHm_v2.0_Chr1g0378231 Rosa chinensis HOM05D000481 ORTHO05D003804 2.6e-16 88.2 54 74.1
Sc19g0001300 Simmondsia chinensis HOM05D000481 ORTHO05D003804 2.6e-16 88.2 52 78.8
GSVIVG01028868001 Vitis vinifera HOM05D000481 ORTHO05D003804 2.6e-16 88.2 52 76.9
Actinidia34153 Actinidia chinensis HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 74.1
AL7G27420 Arabidopsis lyrata HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 70.4
AT4G25660 Arabidopsis thaliana HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 70.4
BcaB03g12483 Brassica carinata HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 68.5
Carub.0007s1531 Capsella rubella HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 70.4
Migut.F01088 Erythranthe guttata HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 74.1
Lsat_1_v5_gn_2_131280 Lactuca sativa HOM05D000481 ORTHO05D003804 3.4e-16 87.8 54 74.1
AL7G27400 Arabidopsis lyrata HOM05D000481 ORTHO05D003804 4.4e-16 87.4 54 70.4
HanXRQChr14g0462521 Helianthus annuus HOM05D000481 ORTHO05D003804 4.4e-16 87.4 54 72.2
MD01G1207800 Malus domestica HOM05D000481 ORTHO05D003804 4.4e-16 87.4 54 72.2
Peaxi162Scf00444g00120 Petunia axillaris HOM05D000481 ORTHO05D003804 4.4e-16 87.4 53 73.6
Gohir.A09G043000 Gossypium hirsutum HOM05D000481 ORTHO05D003804 5.7e-16 87.0 54 74.1
Gohir.D09G043800 Gossypium hirsutum HOM05D000481 ORTHO05D003804 5.7e-16 87.0 54 74.1
MD07G1278400 Malus domestica HOM05D000481 ORTHO05D003804 5.7e-16 87.0 54 72.2
Potri.004G079800 Populus trichocarpa HOM05D000481 ORTHO05D003804 5.7e-16 87.0 54 72.2
Potri.017G143132 Populus trichocarpa HOM05D000481 ORTHO05D003804 5.7e-16 87.0 54 74.1
unitig_22.g5221 Utricularia gibba HOM05D000368 ORTHO05D003804 5.7e-16 87.0 52 73.1
Actinidia08575 Actinidia chinensis HOM05D000481 ORTHO05D003804 7.5e-16 86.7 54 74.1
ATR0661G151 Amborella trichopoda HOM05D000481 ORTHO05D003804 7.5e-16 86.7 54 74.1
Ciclev10005686m.g Citrus clementina HOM05D000481 ORTHO05D003804 7.5e-16 86.7 55 76.4
ECA233G0680 Erigeron canadensis HOM05D000481 ORTHO05D003804 7.5e-16 86.7 54 72.2
Rhsim03G0190600 Rhododendron simsii HOM05D000481 ORTHO05D003804 7.5e-16 86.7 54 74.1
BcaNung07308 Brassica carinata HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 66.7
A01p16920 Brassica napus HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 66.7
C01p21200 Brassica napus HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 66.7
BolC1t02045H Brassica oleracea HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 66.7
BraA01t01644Z Brassica rapa HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 66.7
MBI11_g04752_MAGBIO Magnolia biondii HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 72.2
Sp7g23700 Schrenkiella parvula HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 68.5
Sp7g23720 Schrenkiella parvula HOM05D000481 ORTHO05D003804 9.8e-16 86.3 54 68.5
A01p16940 Brassica napus HOM05D000481 ORTHO05D003804 1.3e-15 85.9 54 68.5
BraA01t01647Z Brassica rapa HOM05D000481 ORTHO05D003804 1.3e-15 85.9 54 68.5
Carub.0007s1528 Capsella rubella HOM05D000481 ORTHO05D003804 1.3e-15 85.9 54 68.5
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.3e-15 85.9 54 68.5
Cfa016282 Carpinus fangiana HOM05D000481 ORTHO05D003804 1.3e-15 85.9 51 76.5
CDE07G1341 Ceratophyllum demersum HOM05D000481 ORTHO05D003804 1.3e-15 85.9 54 72.2
Gohir.A09G182500 Gossypium hirsutum HOM05D000481 ORTHO05D003804 1.3e-15 85.9 56 69.6
Gohir.D09G177100 Gossypium hirsutum HOM05D000481 ORTHO05D003804 1.3e-15 85.9 56 69.6
Gorai.006G199100 Gossypium raimondii HOM05D000481 ORTHO05D003804 1.3e-15 85.9 56 69.6
Lsat_1_v5_gn_8_6621 Lactuca sativa HOM05D000481 ORTHO05D003804 1.3e-15 85.9 55 72.7
Thhalv10026034m.g Eutrema salsugineum HOM05D000481 ORTHO05D003804 1.7e-15 85.5 54 68.5
SalBow4G1927 Salvia bowleyana HOM05D000481 ORTHO05D003804 1.7e-15 85.5 46 84.8
Aa31LG3G8910 Aethionema arabicum HOM05D000481 ORTHO05D003804 2.2e-15 85.1 54 66.7
MD07G1247300 Malus domestica HOM05D000481 ORTHO05D003804 2.8e-15 84.7 54 68.5
TAR629G2084 Trochodendron aralioides HOM05D000481 ORTHO05D003804 2.8e-15 84.7 54 72.2
Actinidia31837 Actinidia chinensis HOM05D000481 ORTHO05D003804 3.7e-15 84.3 54 72.2
Gohir.A08G098300 Gossypium hirsutum HOM05D000481 ORTHO05D003804 4.9e-15 84.0 54 70.4
Gorai.004G117500 Gossypium raimondii HOM05D000481 ORTHO05D003804 4.9e-15 84.0 54 70.4
Oeu060464.1 Olea europaea HOM05D000481 ORTHO05D003804 4.9e-15 84.0 52 73.1
PSO478G0109 Papaver somniferum HOM05D000481 ORTHO05D003804 4.9e-15 84.0 52 73.1
PSO782G3050 Papaver somniferum HOM05D000481 ORTHO05D003804 4.9e-15 84.0 52 73.1
DCAR_014518 Daucus carota HOM05D000481 ORTHO05D003804 6.3e-15 83.6 53 73.6
DCAR_009392 Daucus carota HOM05D000481 ORTHO05D003804 8.3e-15 83.2 54 70.4
Os10g0533900 Oryza sativa ssp. japonica HOM05D000481 ORTHO05D003804 8.3e-15 83.2 54 68.5
Gohir.D08G109900 Gossypium hirsutum HOM05D000481 ORTHO05D003804 1.1e-14 82.8 54 68.5
SalBow2G3393 Salvia bowleyana HOM05D000481 ORTHO05D003804 1.1e-14 82.8 45 82.2
Sc13g0009140 Simmondsia chinensis HOM05D000481 ORTHO05D003804 1.1e-14 82.8 54 68.5
Zm00001eb021890 Zea mays HOM05D000481 ORTHO05D003804 1.4e-14 82.4 54 68.5
Actinidia03136 Actinidia chinensis HOM05D000481 ORTHO05D003804 1.8e-14 82.0 54 70.4
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.8e-14 82.0 54 66.7
Sabra17G0120000 Salix brachista HOM05D000041 ORTHO05D003804 3.1e-14 81.3 46 78.3
TAR375G0573 Trochodendron aralioides HOM05D000481 ORTHO05D003804 3.1e-14 81.3 52 71.2
Sabra04G0053000 Salix brachista HOM05D000481 ORTHO05D003804 4.1e-14 80.9 45 82.2
SEGI_00852 Sequoiadendron giganteum HOM05D000481 ORTHO05D003804 5.4e-14 80.5 54 70.4
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 7.0e-14 80.1 52 67.3
Gorai.006G050800 Gossypium raimondii HOM05D000481 ORTHO05D003804 1.2e-13 79.3 45 82.2
HPP92_008925 Vanilla planifolia HOM05D000481 ORTHO05D003804 1.6e-13 79.0 54 63.0
Hma1.2p1_0327F.1_g126400 Hydrangea macrophylla HOM05D000481 ORTHO05D003804 2.0e-13 78.6 52 67.3
vmacro06630 Vaccinium macrocarpon HOM05D000481 ORTHO05D003804 2.0e-13 78.6 45 82.2
Psat6g196400 Pisum sativum HOM05D000481 ORTHO05D003804 1.0e-12 76.3 54 64.8
Oeu060463.1 Olea europaea HOM05D000481 ORTHO05D003804 1.3e-12 75.9 43 79.1
QL09p012968 Quercus lobata HOM05D000481 ORTHO05D003804 1.7e-12 75.5 43 79.1
Ca_10729_v3 Cicer arietinum L. HOM05D000481 ORTHO05D003804 5.0e-12 73.9 54 64.8
Medtr1g100100 Medicago truncatula HOM05D000481 ORTHO05D003804 5.0e-12 73.9 54 63.0
PSO478G0030 Papaver somniferum HOM05D000034 ORTHO05D000285 8.6e-12 73.2 49 69.4
CBR_g47937 Chara braunii HOM05D000481 ORTHO05D003804 2.5e-11 71.6 54 59.3
MBI04_g39573_MAGBIO Magnolia biondii HOM05D000481 ORTHO05D003804 2.5e-11 71.6 45 73.3
TPR.G7750 Trifolium pratense HOM05D000481 ORTHO05D003804 2.5e-11 71.6 54 63.0
Mapoly0015s0018 Marchantia polymorpha HOM05D000481 ORTHO05D003804 4.3e-11 70.9 54 59.3
Lj1A1004G78 Lonicera japonica HOM05D000481 ORTHO05D003804 9.5e-11 69.7 55 60.0
CAN.G809.23 Capsicum annuum HOM05D000481 ORTHO05D003804 3.6e-10 67.8 60 53.3
SMO119G0290 Selaginella moellendorffii HOM05D000481 ORTHO05D003804 4.7e-10 67.4 54 59.3
Pp3c3_31040 Physcomitrium patens HOM05D000481 ORTHO05D003804 6.1e-10 67.0 51 58.8
Peaxi162Scf00036g00062 Petunia axillaris HOM05D000481 ORTHO05D003804 1.0e-09 66.2 56 50.0
CAN.G809.26 Capsicum annuum HOM05D000481 ORTHO05D003804 3.1e-09 64.7 56 50.0
ECA238G0271 Erigeron canadensis HOM05D000041 ORTHO05D000061 8.9e-09 63.2 46 65.2
Sopen12g014920 Solanum pennellii HOM05D000481 ORTHO05D003804 1.5e-08 62.4 55 49.1
Pp3c8_5480 Physcomitrium patens HOM05D000481 ORTHO05D003804 2.6e-08 61.6 51 54.9
PGSC0003DMG400007338 Solanum tuberosum HOM05D000481 ORTHO05D003804 2.6e-08 61.6 55 49.1
Solyc02g082060.2 Solanum lycopersicum HOM05D000481 ORTHO05D003804 3.4e-08 61.2 55 47.3
Zm00001eb379290 Zea mays HOM05D000481 ORTHO05D003804 4.4e-08 60.8 52 48.1
Nitab4.5_0000844g0120 Nicotiana tabacum HOM05D000481 ORTHO05D003804 5.8e-08 60.5 55 43.6
Nitab4.5_0000614g0100 Nicotiana tabacum HOM05D000481 ORTHO05D003804 7.5e-08 60.1 55 41.8
Oeu005307.1 Olea europaea HOM05D000481 ORTHO05D003804 7.5e-08 60.1 58 44.8
Sopen02g026710 Solanum pennellii HOM05D000481 ORTHO05D003804 9.8e-08 59.7 55 45.5
Nitab4.5_0000844g0010 Nicotiana tabacum HOM05D000481 ORTHO05D003804 1.3e-07 59.3 55 41.8
Oeu026550.1 Olea europaea HOM05D000481 ORTHO05D003804 2.2e-07 58.5 54 48.1
Oeu036714.1 Olea europaea HOM05D000481 ORTHO05D003804 2.2e-07 58.5 54 48.1
Os06g0107000 Oryza sativa ssp. japonica HOM05D000481 ORTHO05D003804 2.2e-07 58.5 58 41.4
Oeu036803.1 Olea europaea HOM05D000481 ORTHO05D003804 2.9e-07 58.2 54 48.1
Oeu036809.1 Olea europaea HOM05D000481 ORTHO05D003804 2.9e-07 58.2 54 48.1
Oeu016204.1 Olea europaea HOM05D000481 ORTHO05D003804 3.7e-07 57.8 57 45.6
Glyma.10G231400 Glycine max HOM05D000481 ORTHO05D003804 4.9e-07 57.4 54 53.7
Oeu036811.1 Olea europaea HOM05D000481 ORTHO05D003804 3.2e-06 54.7 54 44.4
Aa31LG7G12070 Aethionema arabicum HOM05D000481 ORTHO05D003804 7.0e-06 53.5 37 56.8
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 7.0e-06 53.5 58 46.6
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 7.0e-06 53.5 58 46.6


User provided reference genes

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