Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G143500 Manihot esculenta HOM05D005525 ORTHO05D006341 0.0e+00 1273.1 708 100.0
Manes.01G184300 Manihot esculenta HOM05D005525 ORTHO05D006341 2.2e-246 855.9 701 74.0
Sabra12G0015700 Salix brachista HOM05D005525 ORTHO05D006341 2.1e-220 769.6 704 63.8
Potri.012G016600 Populus trichocarpa HOM05D005525 ORTHO05D006341 4.6e-220 768.5 705 64.7
Potri.015G012000 Populus trichocarpa HOM05D005525 ORTHO05D006341 6.2e-209 731.5 716 61.7
Duzib068G0374 Durio zibethinus HOM05D005525 ORTHO05D006341 5.3e-208 728.4 703 59.9
Duzib205G1243 Durio zibethinus HOM05D005525 ORTHO05D006341 4.6e-204 715.3 705 60.6
Thecc.03G200300 Theobroma cacao HOM05D005525 ORTHO05D006341 3.0e-203 712.6 709 59.2
GSVIVG01038560001 Vitis vinifera HOM05D005525 ORTHO05D006341 6.5e-198 694.9 710 56.9
Cpa.g.sc3.96 Carica papaya HOM05D005525 ORTHO05D006341 3.7e-193 679.1 713 58.8
Haze_00203 Corylus avellana HOM05D005525 ORTHO05D006341 4.1e-192 675.6 723 56.6
Sabra15G0009700 Salix brachista HOM05D005525 ORTHO05D006341 1.1e-189 667.5 713 58.1
Gohir.A03G052000 Gossypium hirsutum HOM05D005525 ORTHO05D006341 3.2e-189 666.0 712 54.5
Cfa016238 Carpinus fangiana HOM05D005525 ORTHO05D006341 3.5e-188 662.5 715 56.8
Prupe.2G309100 Prunus persica HOM05D005525 ORTHO05D006341 1.8e-187 660.2 711 57.0
TWI39G0464 Tripterygium wilfordii HOM05D005525 ORTHO05D006341 9.7e-186 654.4 709 56.6
Gohir.D12G250100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 2.2e-185 653.3 714 55.2
Gorai.008G268200 Gossypium raimondii HOM05D005525 ORTHO05D006341 1.4e-184 650.6 715 55.2
Gohir.D03G115100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 2.4e-184 649.8 712 54.5
QL09p008682 Quercus lobata HOM05D005525 ORTHO05D006341 2.0e-183 646.7 712 53.7
vmacro10127 Vaccinium macrocarpon HOM05D005525 ORTHO05D006341 4.5e-183 645.6 750 51.6
MD07G1287000 Malus domestica HOM05D005525 ORTHO05D006341 7.7e-183 644.8 711 54.3
Actinidia06143 Actinidia chinensis HOM05D005525 ORTHO05D006341 1.0e-182 644.4 711 53.6
Rhsim09G0206200 Rhododendron simsii HOM05D005525 ORTHO05D006341 1.7e-182 643.7 715 53.1
Ciclev10018919m.g Citrus clementina HOM05D005525 ORTHO05D006341 6.5e-182 641.7 700 57.1
Gorai.003G121400 Gossypium raimondii HOM05D005525 ORTHO05D006341 1.2e-180 637.5 712 53.8
Hma1.2p1_0404F.1_g145280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 2.8e-177 626.3 702 53.7
COL.COLO4_16772 Corchorus olitorius HOM05D005525 ORTHO05D006341 4.8e-177 625.5 713 54.8
CsaV3_3G019800 Cucumis sativus L. HOM05D005525 ORTHO05D006341 6.3e-177 625.2 720 52.9
MELO3C008500.2 Cucumis melo HOM05D005525 ORTHO05D006341 1.2e-175 620.9 717 52.4
ClCG05G008980 Citrullus lanatus HOM05D005525 ORTHO05D006341 1.4e-173 614.0 713 52.5
FAN06G2949 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.7e-172 609.8 714 54.9
FAN06G1464 Fragaria x ananassa HOM05D005525 ORTHO05D006341 1.4e-171 607.4 714 54.8
Hma1.2p1_1587F.1_g292280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 3.0e-171 606.3 702 52.0
Sed0006937 Sechium edule HOM05D005525 ORTHO05D006341 5.7e-170 602.1 719 51.6
Atru.chr12.2235 Acer truncatum HOM05D005525 ORTHO05D006341 1.3e-169 600.9 719 51.9
CSS0016451 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 2.8e-169 599.7 697 51.4
TAR636G1140 Trochodendron aralioides HOM05D005525 ORTHO05D006341 6.3e-169 598.6 730 51.0
TAR375G0567 Trochodendron aralioides HOM05D005525 ORTHO05D006341 1.4e-168 597.4 739 49.7
FAN03G1856 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.4e-168 596.7 714 54.2
Eucgr.A01450 Eucalyptus grandis HOM05D005525 ORTHO05D006341 3.1e-168 596.3 715 51.6
FvH4_7g31370 Fragaria vesca HOM05D005525 ORTHO05D006341 9.1e-168 594.7 714 53.8
FAN01G0744 Fragaria x ananassa HOM05D005525 ORTHO05D006341 1.0e-166 591.3 712 52.8
PGSC0003DMG400018550 Solanum tuberosum HOM05D005525 ORTHO05D006341 1.1e-165 587.8 718 49.4
Oeu041060.1 Olea europaea HOM05D005525 ORTHO05D006341 3.2e-165 586.3 710 51.3
RcHm_v2.0_Chr1g0380441 Rosa chinensis HOM05D005525 ORTHO05D006341 6.1e-164 582.0 711 52.3
CSS0028512 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 6.7e-163 578.6 715 51.3
arahy.Tifrunner.gnm1.ann1.9S9EKZ Arachis hypogaea HOM05D005525 ORTHO05D006341 8.8e-163 578.2 722 50.8
arahy.Tifrunner.gnm1.ann1.SHH15X Arachis hypogaea HOM05D005525 ORTHO05D006341 8.8e-163 578.2 719 50.9
Peaxi162Scf00740g10015 Petunia axillaris HOM05D005525 ORTHO05D006341 4.4e-162 575.9 720 48.5
CiPaw.05G197600 Carya illinoinensis HOM05D005525 ORTHO05D006341 3.8e-158 562.8 724 49.3
TAR425G0002 Trochodendron aralioides HOM05D005525 ORTHO05D006341 1.1e-157 561.2 728 49.2
Sopen03g022860 Solanum pennellii HOM05D005525 ORTHO05D006341 1.5e-157 560.8 710 48.7
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 2.5e-157 560.1 711 50.1
Cc02_g01440 Coffea canephora HOM05D005525 ORTHO05D006341 4.2e-157 559.3 714 49.0
Phvul.009G051800 Phaseolus vulgaris HOM05D005525 ORTHO05D006341 1.2e-156 557.8 715 49.1
CANSAT21G1899 Cannabis sativa HOM05D005525 ORTHO05D006341 1.6e-156 557.4 723 49.4
Nn3g18957 Nelumbo nucifera HOM05D005525 ORTHO05D006341 2.7e-156 556.6 722 49.4
Solyc03g083060.3 Solanum lycopersicum HOM05D005525 ORTHO05D006341 3.6e-156 556.2 718 47.9
MSTRG.8648 Avicennia marina HOM05D005525 ORTHO05D006341 4.7e-156 555.8 718 46.9
Glyma.04G234800 Glycine max HOM05D005525 ORTHO05D006341 6.1e-156 555.4 715 50.9
Actinidia03175 Actinidia chinensis HOM05D005525 ORTHO05D006341 2.3e-155 553.5 611 52.7
CAN.G481.19 Capsicum annuum HOM05D005525 ORTHO05D006341 8.8e-155 551.6 718 47.1
TWI14G1294 Tripterygium wilfordii HOM05D005525 ORTHO05D006341 5.7e-154 548.9 709 50.1
Dinv29269 Davidia involucrata HOM05D005525 ORTHO05D006341 7.5e-154 548.5 614 53.3
Medtr3g091650 Medicago truncatula HOM05D005525 ORTHO05D006341 1.1e-149 534.6 686 48.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.5e-149 533.5 714 48.6
DCAR_010595 Daucus carota HOM05D005525 ORTHO05D006341 5.5e-149 532.3 710 47.0
Lalb_Chr08g0240181 Lupinus albus HOM05D005525 ORTHO05D006341 9.8e-146 521.5 714 47.9
Nitab4.5_0007888g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 1.3e-145 521.2 716 45.8
Lj2g0006014 Lotus japonicus HOM05D005525 ORTHO05D006341 1.1e-144 518.1 718 49.2
PGR042G3532 Punica granatum HOM05D005525 ORTHO05D006341 3.1e-144 516.5 707 48.4
Lj3A903T39 Lonicera japonica HOM05D005525 ORTHO05D006341 1.2e-143 514.6 672 47.6
TPR.G18747 Trifolium pratense HOM05D005525 ORTHO05D006341 3.5e-143 513.1 710 47.5
Psat5g076600 Pisum sativum HOM05D005525 ORTHO05D006341 2.1e-140 503.8 697 47.6
Ca_16715_v3 Cicer arietinum L. HOM05D005525 ORTHO05D006341 2.0e-138 497.3 700 47.1
MSTRG.27021 Avicennia marina HOM05D005525 ORTHO05D006341 1.8e-136 490.7 705 44.3
Nitab4.5_0007005g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 1.6e-132 477.6 647 46.5
Gohir.A12G249300 Gossypium hirsutum HOM05D005525 ORTHO05D006341 2.8e-132 476.9 555 52.1
Hund11649 Selenicereus undatus HOM05D005525 ORTHO05D006341 1.9e-128 464.2 717 44.1
Aqoxy5G03920 Aquilegia oxysepala HOM05D005525 ORTHO05D006341 1.5e-125 454.5 735 41.5
PSO170G3224 Papaver somniferum HOM05D005525 ORTHO05D006341 2.6e-122 443.7 724 42.0
PSO063G1159 Papaver somniferum HOM05D005525 ORTHO05D006341 8.3e-121 438.7 723 40.9
THA.LOC104799969 Tarenaya hassleriana HOM05D005525 ORTHO05D006341 5.4e-120 436.0 685 43.8
MBI07_g24776_MAGBIO Magnolia biondii HOM05D005525 ORTHO05D006341 6.0e-119 432.6 593 47.0
HanXRQChr04g0100481 Helianthus annuus HOM05D005525 ORTHO05D006341 2.8e-116 423.7 700 41.3
EL10Ac3g05265 Beta vulgaris HOM05D005525 ORTHO05D006341 6.2e-116 422.5 714 42.6
Lj1A1021T46 Lonicera japonica HOM05D005525 ORTHO05D006341 1.8e-115 421.0 708 41.7
Lj1C1018G9 Lonicera japonica HOM05D005525 ORTHO05D006341 1.3e-113 414.8 708 41.5
Hund21011 Selenicereus undatus HOM05D005525 ORTHO05D006341 3.8e-113 413.3 714 41.5
AUR62019416 Chenopodium quinoa HOM05D005525 ORTHO05D006341 4.6e-111 406.4 732 41.0
AUR62006078 Chenopodium quinoa HOM05D005525 ORTHO05D006341 7.8e-111 405.6 716 42.3
Lsat_1_v5_gn_2_136220 Lactuca sativa HOM05D005525 ORTHO05D006341 1.2e-106 391.7 649 43.5
SGA_v2.0_scaffold192G40531 Striga asiatica HOM05D005525 ORTHO05D006341 1.4e-99 368.2 634 43.1
Sc13g0009970 Simmondsia chinensis HOM05D005525 ORTHO05D006341 8.4e-97 359.0 766 36.7
ATR0602G130 Amborella trichopoda HOM05D005525 ORTHO05D006341 1.1e-96 358.6 833 36.1
AL8G27640 Arabidopsis lyrata HOM05D005525 ORTHO05D006341 5.4e-96 356.3 656 40.2
unitig_92.g28252 Utricularia gibba HOM05D005525 ORTHO05D006341 5.1e-94 349.7 702 35.9
AT5G53020 Arabidopsis thaliana HOM05D005525 ORTHO05D006341 4.3e-93 346.7 660 39.8
Migut.F00203 Erythranthe guttata HOM05D005525 ORTHO05D006341 4.8e-92 343.2 712 36.4
HPP92_027874 Vanilla planifolia HOM05D005525 ORTHO05D006341 6.9e-91 339.3 705 38.0
CDE10G1205 Ceratophyllum demersum HOM05D005525 ORTHO05D006341 8.4e-89 332.4 705 36.0
Thhalv10012800m.g Eutrema salsugineum HOM05D005525 ORTHO05D006341 8.4e-89 332.4 659 39.5
Sp6g15170 Schrenkiella parvula HOM05D005525 ORTHO05D006341 7.4e-85 319.3 662 40.2
Hma1.2p1_1507F.1_g287640 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 4.0e-83 313.5 522 41.4
CARHR266030 Cardamine hirsuta HOM05D005525 ORTHO05D006341 5.8e-82 309.7 661 37.5
BcaB08g35660 Brassica carinata HOM05D005525 ORTHO05D006341 4.9e-81 306.6 660 36.8
Carub.0008s1321 Capsella rubella HOM05D005525 ORTHO05D006341 1.1e-80 305.4 656 38.1
Aa31LG3G9460 Aethionema arabicum HOM05D005525 ORTHO05D006341 3.8e-73 280.4 652 39.4
SalBow2G0921 Salvia bowleyana HOM05D005525 ORTHO05D006341 6.5e-73 279.6 706 32.7
BolC9t57148H Brassica oleracea HOM05D005525 ORTHO05D006341 1.2e-71 275.4 663 34.7
BcaC04g20517 Brassica carinata HOM05D005525 ORTHO05D006341 4.6e-71 273.5 663 34.5
C09p42720 Brassica napus HOM05D005525 ORTHO05D006341 3.0e-70 270.8 663 34.4
BraA10t43132Z Brassica rapa HOM05D005525 ORTHO05D006341 3.0e-70 270.8 666 35.1
QL04p080554 Quercus lobata HOM05D005525 ORTHO05D006341 1.8e-67 261.5 504 39.3
A10p10490 Brassica napus HOM05D005525 ORTHO05D006341 1.0e-65 255.8 661 34.3
unitig_52.g17717 Utricularia gibba HOM05D005525 ORTHO05D006341 1.1e-59 235.7 674 31.9
Migut.F01024 Erythranthe guttata HOM05D005525 ORTHO05D006341 1.0e-57 229.2 700 31.6
SEGI_37005 Sequoiadendron giganteum HOM05D005525 ORTHO05D006341 4.2e-56 223.8 601 30.1
Oeu023660.1 Olea europaea HOM05D005525 ORTHO05D006341 2.3e-54 218.0 298 45.0
Hma1.2p1_0001F.1_g001190 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 1.5e-53 215.3 295 47.5
HPP92_006332 Vanilla planifolia HOM05D005525 ORTHO05D006341 6.5e-49 199.9 426 36.6
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 7.5e-45 186.4 393 39.4
Zm00001eb162450 Zea mays HOM05D005525 ORTHO05D006341 1.3e-44 185.7 695 30.8
Zm00001eb441470 Zea mays HOM05D005525 ORTHO05D006341 1.3e-44 185.7 695 30.8
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 2.9e-41 174.5 285 44.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.9e-40 171.8 343 40.8
Os01g0550600 Oryza sativa ssp. japonica HOM05D005525 ORTHO05D006341 4.5e-34 150.6 677 29.5
Pp3c14_1700 Physcomitrium patens HOM05D005525 ORTHO05D006341 8.0e-31 139.8 585 25.8
QL04p043279 Quercus lobata HOM05D005525 ORTHO05D006341 4.5e-26 124.0 147 53.1
Pp3c10_6810 Physcomitrium patens HOM05D019088 ORTHO05D006341 1.2e-23 115.9 524 25.0
Pp3c14_9740 Physcomitrium patens HOM05D019088 ORTHO05D006341 4.9e-20 104.0 548 23.0
MBI08_g26779_MAGBIO Magnolia biondii HOM05D005525 ORTHO05D006341 9.2e-19 99.8 76 67.1
Pp3c1_27330 Physcomitrium patens HOM05D019088 ORTHO05D006341 8.6e-17 93.2 499 23.6
Pp3c6_22830 Physcomitrium patens HOM05D019088 ORTHO05D006341 5.2e-14 84.0 365 26.0
Pp3c2_18840 Physcomitrium patens HOM05D005525 ORTHO05D006341 6.4e-12 77.0 705 20.9
Dinv06084 Davidia involucrata HOM05D005525 ORTHO05D006341 5.6e-08 63.9 70 51.4
TAR629G0494 Trochodendron aralioides HOM05D006760 ORTHO05D008121 1.4e-06 59.3 81 43.2
Dinv41816 Davidia involucrata HOM05D006760 ORTHO05D008121 3.1e-06 58.2 81 42.0
BcaC01g01943 Brassica carinata HOM05D006760 ORTHO05D008121 4.0e-06 57.8 81 42.0
C03p70350 Brassica napus HOM05D006760 ORTHO05D008121 4.0e-06 57.8 81 42.0
BolC3t19291H Brassica oleracea HOM05D006760 ORTHO05D008121 4.0e-06 57.8 81 42.0
CARHR154260 Cardamine hirsuta HOM05D006760 ORTHO05D008121 4.0e-06 57.8 81 42.0
Cc00_g07450 Coffea canephora HOM05D006760 ORTHO05D008121 4.0e-06 57.8 81 42.0
Rhsim12G0184000 Rhododendron simsii HOM05D005525 ORTHO05D006341 5.2e-06 57.4 63 54.0
CAN.G694.98 Capsicum annuum HOM05D005525 ORTHO05D006341 6.8e-06 57.0 59 50.8
DCAR_006312 Daucus carota HOM05D006760 ORTHO05D008121 8.9e-06 56.6 81 43.2


User provided reference genes

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