Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 4.0e-116 421.4 208 100.0
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.2e-104 383.3 208 92.8
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 6.7e-95 350.9 212 84.9
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.8e-93 344.7 211 83.9
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.1e-92 343.6 213 83.6
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.1e-92 343.6 213 83.1
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.4e-92 342.4 213 82.6
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.1e-92 342.0 212 81.6
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.1e-92 340.5 214 83.2
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.2e-91 340.1 214 82.2
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.4e-91 338.6 209 83.7
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.3e-90 336.7 213 81.2
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.7e-90 336.3 216 81.0
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.2e-90 335.9 216 81.0
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.9e-90 335.5 209 81.8
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.8e-90 335.1 219 80.4
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.8e-90 335.1 214 80.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 5.0e-90 334.7 209 81.3
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 6.5e-90 334.3 209 81.8
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 8.5e-90 334.0 209 80.4
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.5e-90 334.0 211 80.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 8.5e-90 334.0 208 80.8
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 8.5e-90 334.0 210 80.0
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.5e-89 332.4 211 79.6
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.2e-89 332.0 212 80.2
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 4.2e-89 331.6 207 83.1
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.5e-89 331.3 214 79.0
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 7.2e-89 330.9 208 78.4
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 7.2e-89 330.9 211 81.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 9.4e-89 330.5 208 78.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 9.4e-89 330.5 213 80.8
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.2e-88 330.1 217 79.3
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.6e-88 329.7 210 80.0
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.1e-88 329.3 214 79.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-88 329.3 214 79.0
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.1e-88 329.3 214 79.4
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.7e-88 328.9 212 80.7
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 6.1e-88 327.8 212 80.7
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 8.0e-88 327.4 215 79.5
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.0e-88 327.4 212 80.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-87 327.0 212 80.2
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.4e-87 326.6 214 79.4
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.8e-87 326.2 215 78.6
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.0e-87 325.5 216 79.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 8.8e-87 323.9 215 79.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.0e-86 322.8 209 79.9
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 3.3e-86 322.0 210 79.5
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.3e-86 322.0 216 77.3
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.3e-86 322.0 210 79.0
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 4.4e-86 321.6 217 78.3
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 5.7e-86 321.2 209 78.5
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.3e-85 320.1 209 78.0
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 1.3e-85 320.1 215 77.7
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.7e-85 319.7 209 79.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.2e-85 319.3 215 78.1
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.8e-85 318.9 211 79.6
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 2.8e-85 318.9 215 78.1
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.8e-85 318.9 215 78.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.7e-85 318.5 213 79.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.8e-85 318.2 214 77.6
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 8.2e-85 317.4 218 75.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 77.7
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 77.7
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.1e-84 317.0 208 77.9
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-84 317.0 213 75.6
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.4e-84 316.6 223 74.9
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.4e-84 316.6 215 78.1
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.8e-84 316.2 219 75.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.1e-84 315.1 213 78.9
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 7.0e-84 314.3 214 79.0
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 7.0e-84 314.3 212 77.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.1e-84 313.9 215 77.2
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 9.1e-84 313.9 213 78.4
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 2.0e-83 312.8 212 77.4
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.0e-83 312.8 215 76.3
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.0e-83 312.8 213 75.6
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.5e-83 312.0 210 78.6
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.7e-83 310.8 211 76.8
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 1.0e-82 310.5 193 82.4
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.3e-82 310.1 215 76.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-82 309.7 213 77.0
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.7e-82 309.7 213 76.5
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.2e-82 309.3 215 76.7
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-82 309.3 207 77.3
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.2e-82 309.3 210 75.2
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.9e-82 308.9 215 74.4
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.9e-82 308.9 208 77.4
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 3.8e-82 308.5 225 74.2
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 5.0e-82 308.1 216 75.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 6.5e-82 307.8 211 74.9
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.1e-81 307.0 216 74.5
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.1e-81 307.0 216 75.0
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.5e-81 306.6 204 79.4
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.9e-81 306.2 197 80.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 3.2e-81 305.4 210 75.7
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.2e-81 305.4 225 73.3
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.2e-81 305.4 204 78.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-81 305.1 204 79.4
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-81 305.1 204 79.4
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 5.2e-79 298.1 212 71.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.2e-78 297.0 208 73.6
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.5e-78 296.6 216 72.7
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.3e-78 295.4 213 73.7
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 4.4e-78 295.0 212 72.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 5.7e-78 294.7 209 72.2
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 9.7e-78 293.9 182 83.5
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.7e-77 293.1 211 72.5
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.2e-77 292.7 215 72.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.2e-77 292.7 212 73.1
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.8e-77 292.4 213 72.8
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.7e-77 292.0 213 72.3
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.7e-77 292.0 212 72.6
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.8e-77 291.6 215 72.1
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 6.3e-77 291.2 211 72.5
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 8.2e-77 290.8 157 89.2
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.4e-76 290.0 211 71.6
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.8e-76 289.7 215 71.2
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 2.4e-76 289.3 214 71.0
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.4e-76 289.3 210 71.4
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 3.1e-76 288.9 190 78.9
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.1e-76 288.9 179 79.9
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 5.3e-76 288.1 215 71.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 7.0e-76 287.7 214 71.0
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.7e-75 285.8 157 87.9
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.9e-74 282.3 208 69.7
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 5.0e-74 281.6 210 73.3
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.5e-73 279.3 215 71.6
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.5e-73 278.1 214 69.6
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.7e-72 275.8 211 71.1
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.7e-72 275.8 211 71.1
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.4e-71 273.5 211 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.3e-71 272.7 148 86.5
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 4.0e-71 271.9 146 86.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.2e-70 270.4 208 67.8
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.6e-70 269.2 148 85.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.2e-69 266.2 158 81.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.3e-69 264.2 157 81.5
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 149 83.9
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.1e-68 262.3 149 83.9
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 9.1e-68 260.8 147 83.7
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 9.1e-68 260.8 157 80.3
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.5e-65 253.4 197 67.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 2.8e-61 239.2 180 68.9
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.2e-59 233.8 145 77.2
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.8e-59 231.1 209 63.2
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.5e-57 226.9 200 59.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.0e-55 220.7 215 61.9
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 4.0e-55 218.8 151 70.2
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 8.0e-48 194.5 206 54.9
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.3e-42 176.4 92 90.2
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.5e-33 147.1 75 93.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 8.4e-21 104.8 105 59.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.4e-20 103.2 105 60.0
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 9.3e-20 101.3 105 59.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 6.0e-11 72.0 73 54.8
Lsat_1_v5_gn_9_92701 Lactuca sativa HOM05D004620 ORTHO05D231681 7.6e-06 55.1 92 41.3


User provided reference genes

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