Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 0.0e+00 1934.8 993 100.0
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 0.0e+00 1289.6 995 67.8
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 0.0e+00 1239.9 968 67.1
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 0.0e+00 1162.1 995 61.4
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 0.0e+00 1152.9 994 60.4
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 0.0e+00 1148.7 994 61.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 0.0e+00 1148.3 995 61.2
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1147.1 994 59.9
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 0.0e+00 1137.9 999 60.3
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 0.0e+00 1133.2 994 59.4
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 0.0e+00 1127.5 994 60.7
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 0.0e+00 1112.1 977 59.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 0.0e+00 1107.4 990 58.6
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 0.0e+00 1098.6 984 57.2
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 0.0e+00 1097.0 955 59.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 0.0e+00 1083.9 993 57.3
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 0.0e+00 1075.1 997 56.5
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.1e-287 992.6 989 53.8
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 5.4e-283 978.0 996 52.1
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 3.2e-280 968.8 973 53.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 9.8e-277 957.2 949 53.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 1.7e-276 956.4 993 50.6
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 1.8e-275 953.0 968 52.7
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.2e-275 950.7 993 51.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 8.6e-273 944.1 995 50.3
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 4.7e-271 938.3 995 51.8
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 2.3e-265 919.5 1002 50.4
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 5.0e-257 891.7 985 48.8
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 1.1e-256 890.6 991 48.4
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.8e-255 885.9 1000 48.6
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.9e-249 865.5 802 56.4
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 7.6e-245 851.3 1075 46.0
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 2.9e-244 849.4 1080 45.3
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.0e-241 840.9 997 48.6
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.4e-238 829.7 997 47.4
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 2.1e-231 806.6 1212 42.2
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 2.5e-200 703.4 537 67.4
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.6e-194 684.1 615 58.9
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 2.7e-194 683.3 482 69.5
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.6e-189 666.8 548 63.3
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.9e-189 665.6 476 68.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 5.5e-187 659.1 457 70.5
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 7.2e-187 658.7 472 67.8
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 1.4e-185 654.4 496 65.3
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 1.4e-182 644.4 473 67.9
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 3.1e-182 643.3 481 65.7
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.5e-181 639.4 480 65.2
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.5e-179 634.4 766 47.4
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 1.9e-179 634.0 465 68.0
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.1e-178 630.6 1309 34.1
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 4.4e-176 622.9 458 65.3
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 9.7e-176 621.7 499 60.1
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.3e-175 621.3 449 65.7
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 2.0e-173 614.0 460 66.1
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.1e-171 608.2 468 63.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.6e-170 604.4 458 62.0
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 3.6e-170 603.2 495 59.0
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.2e-168 598.2 502 58.2
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 2.0e-168 597.4 458 64.6
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 5.7e-168 595.9 502 58.0
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 1.3e-167 594.7 485 62.5
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.8e-167 592.8 468 63.0
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 1.1e-166 591.7 458 64.4
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.4e-166 591.3 496 60.7
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 2.4e-166 590.5 468 62.8
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 7.0e-166 589.0 415 71.1
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 1.6e-165 587.8 474 61.4
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.3e-164 584.7 467 62.7
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.0e-161 575.1 450 64.4
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 3.0e-161 573.5 450 64.4
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 1.2e-160 571.6 458 62.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.6e-157 561.2 481 60.1
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.3e-156 557.4 460 61.5
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.5e-155 553.9 461 61.0
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 4.7e-154 549.7 475 59.2
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.0e-153 548.5 457 59.7
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 2.0e-152 544.3 451 61.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 3.4e-152 543.5 459 59.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 4.4e-152 543.1 451 61.4
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 2.2e-151 540.8 461 57.7
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 4.9e-151 539.7 481 58.8
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 8.3e-151 538.9 733 45.0
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 1.1e-150 538.5 451 61.6
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 1.4e-150 538.1 455 57.1
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.4e-150 536.2 451 61.4
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 2.0e-149 534.3 342 75.1
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 3.9e-148 530.0 1109 33.0
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 6.6e-148 529.3 460 59.6
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.2e-146 525.0 1083 34.2
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.3e-143 515.0 472 57.8
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 7.0e-142 509.2 1070 33.4
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 1.2e-141 508.4 475 57.1
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 5.6e-139 499.6 466 52.8
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 3.6e-138 496.9 1093 32.7
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 3.6e-138 496.9 354 68.4
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 9.9e-136 488.8 355 66.5
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 4.1e-134 483.4 486 54.7
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 4.1e-134 483.4 486 54.7
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 5.4e-134 483.0 352 67.3
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.5e-128 464.9 472 52.1
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 2.1e-122 444.5 359 62.4
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 6.2e-122 443.0 379 59.9
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 4.0e-121 440.3 714 38.5
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 3.4e-120 437.2 636 43.2
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.5e-112 411.8 470 45.5
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 4.9e-111 406.8 309 62.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 7.1e-110 402.9 992 30.8
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.8e-105 388.3 363 57.6
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.1e-101 374.8 461 45.3
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 9.0e-97 359.4 422 43.1
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 2.4e-89 334.7 367 50.4
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 4.6e-85 320.5 257 63.8
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 6.7e-76 290.0 320 47.5
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 6.7e-68 263.5 624 33.7
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 5.7e-67 260.4 259 51.0
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.0e-65 253.4 206 60.2
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.8e-63 247.7 196 66.8
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 5.5e-62 243.8 209 59.3
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 5.3e-57 227.3 179 63.7
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 2.2e-55 221.9 189 61.9
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 3.6e-45 188.0 117 74.4
TAR628G0523 Trochodendron aralioides HOM05D002030 ORTHO05D007413 2.6e-35 155.2 235 41.3
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 1.6e-32 146.0 315 34.9
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 1.8e-28 132.5 146 50.7
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 2.5e-22 112.1 626 24.3
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 8.1e-21 107.1 75 62.7
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 5.2e-12 77.8 79 51.9
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 7.8e-08 63.9 41 61.0
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 2.3e-07 62.4 123 39.0


User provided reference genes

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