Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.5e-138 496.1 245 100.0
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 3.1e-99 365.5 247 77.3
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 4.1e-99 365.2 242 76.4
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.0e-98 362.8 245 76.3
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.3e-97 360.1 243 75.3
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.3e-96 354.0 242 75.6
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 1.2e-95 353.6 245 74.7
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 3.6e-95 352.1 242 73.1
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.6e-95 351.7 246 75.2
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 2.3e-94 349.4 220 80.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 1.9e-93 346.3 244 75.0
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.1e-91 339.0 245 71.4
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.2e-90 337.0 247 70.0
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 2.6e-90 335.9 232 73.3
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 5.0e-89 331.6 247 71.7
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.4e-88 330.1 247 72.1
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 3.2e-88 328.9 246 70.7
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.7e-87 325.9 245 69.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 3.6e-87 325.5 245 69.0
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 4.6e-87 325.1 245 69.4
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 6.1e-87 324.7 241 71.0
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 6.1e-87 324.7 261 64.4
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.0e-86 323.9 232 72.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.0e-86 322.4 245 68.6
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 6.7e-86 321.2 229 72.1
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 8.8e-86 320.9 232 71.6
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-85 319.7 240 69.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 3.3e-85 318.9 231 72.3
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 5.7e-85 318.2 245 67.8
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 7.4e-85 317.8 240 69.2
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 2.8e-84 315.8 255 64.7
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.8e-84 315.1 240 68.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.3e-84 314.7 249 65.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 8.2e-84 314.3 233 70.0
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 1.8e-83 313.2 248 66.1
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.4e-83 312.8 248 66.1
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 9.1e-83 310.8 248 69.0
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 3.4e-82 308.9 254 65.7
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 4.5e-82 308.5 246 64.6
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.3e-81 307.0 236 66.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.7e-81 306.6 231 70.6
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 2.2e-81 306.2 242 64.5
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.8e-81 305.4 246 64.6
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 5.0e-81 305.1 246 64.2
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 8.5e-81 304.3 212 71.7
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.4e-80 303.5 218 74.3
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.2e-79 300.4 250 67.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.6e-79 300.1 246 68.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.7e-79 299.3 196 76.5
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 3.3e-77 292.4 209 71.3
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.3e-77 292.4 244 63.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.2e-76 289.7 253 63.2
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.2e-76 289.7 245 61.6
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.0e-75 284.6 249 62.7
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 9.1e-75 284.3 235 65.1
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.2e-74 283.9 240 64.2
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.2e-74 283.9 249 63.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.0e-74 283.1 214 67.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.0e-74 283.1 256 61.3
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.0e-73 280.8 221 68.8
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.7e-73 280.0 237 67.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.2e-73 279.6 249 63.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.9e-73 279.3 243 60.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 3.8e-73 278.9 243 60.5
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.5e-72 276.9 177 82.5
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.5e-72 276.9 203 69.0
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.9e-72 276.6 252 61.5
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 2.5e-72 276.2 276 56.5
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.2e-71 273.9 270 56.7
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-71 272.3 247 60.7
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 3.6e-71 272.3 247 60.7
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 8.0e-71 271.2 227 65.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.8e-70 270.0 271 58.3
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.8e-70 270.0 297 54.9
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.0e-70 268.9 239 61.5
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 5.2e-70 268.5 242 62.8
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 5.2e-70 268.5 251 60.6
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 8.8e-70 267.7 211 67.3
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 8.8e-70 267.7 248 61.3
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.5e-69 266.9 275 56.4
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.6e-69 266.2 267 58.1
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.7e-69 265.0 205 65.9
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 7.5e-69 264.6 242 59.9
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.2e-68 263.1 240 62.9
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.2e-68 263.1 250 59.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 8.2e-68 261.2 219 63.9
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.1e-67 258.8 255 56.9
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 3.5e-66 255.8 251 54.6
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 4.5e-66 255.4 280 56.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 4.5e-66 255.4 175 76.0
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.3e-65 253.8 253 57.7
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 1.3e-65 253.8 257 57.6
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.7e-65 253.4 178 75.3
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.0e-65 251.9 202 66.8
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 1.1e-64 250.8 238 59.2
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.9e-64 250.0 259 55.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.2e-64 248.8 259 55.6
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.2e-64 248.8 259 55.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 7.2e-64 248.1 259 55.6
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 7.2e-64 248.1 256 57.8
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.6e-63 246.9 259 55.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.6e-63 245.7 205 63.4
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 6.1e-63 245.0 238 58.4
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.8e-62 243.4 222 59.5
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 2.3e-62 243.0 245 55.5
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 2.6e-61 239.6 199 64.8
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 7.5e-61 238.0 175 72.6
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 9.8e-61 237.7 224 56.2
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 8.3e-60 234.6 218 59.6
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 2.4e-59 233.0 249 56.6
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.6e-58 230.3 248 50.8
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.5e-58 228.8 181 64.1
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 5.0e-57 225.3 202 61.9
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 6.5e-57 224.9 244 52.5
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.2e-56 222.6 195 62.1
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 9.5e-56 221.1 255 51.4
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.0e-54 217.6 208 58.2
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 3.0e-54 216.1 253 49.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-52 210.7 241 51.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.7e-52 210.3 242 52.1
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.8e-52 209.5 241 51.0
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 3.7e-52 209.1 207 54.1
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.4e-51 206.5 200 58.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 9.2e-51 204.5 243 51.0
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 2.1e-47 193.4 137 77.4
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.6e-47 192.6 201 57.2
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 4.7e-47 192.2 163 62.6
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 2.3e-46 189.9 179 61.5
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 4.0e-46 189.1 245 46.1
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 4.0e-46 189.1 180 57.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.4e-45 186.0 175 57.7
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 4.4e-45 185.7 199 53.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-44 184.1 138 74.6
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 6.4e-44 181.8 170 58.8
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 3.2e-43 179.5 115 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 7.0e-43 178.3 146 58.2
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 1.2e-42 177.6 189 51.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.5e-40 170.6 133 68.4
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.5e-40 170.6 154 66.9
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 4.7e-39 165.6 203 50.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.4e-38 164.1 141 67.4
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 5.8e-37 158.7 160 58.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.9e-36 156.4 139 68.3
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.4e-36 155.2 143 55.9
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 3.5e-34 149.4 146 63.7
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 3.5e-34 149.4 130 67.7
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.6e-34 149.1 119 60.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.9e-33 146.0 156 51.9
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.3e-32 142.9 190 43.7
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 6.2e-31 138.7 105 62.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 3.4e-29 132.9 254 39.4
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 3.5e-26 122.9 248 39.5
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 1.4e-22 110.9 90 54.4
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 2.4e-22 110.2 148 53.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 1.5e-21 107.5 97 66.0
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 2.0e-21 107.1 159 39.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.4e-21 106.3 101 49.5
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 5.8e-21 105.5 134 52.2
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.3e-20 104.4 121 42.1
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-20 104.0 87 64.4
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.9e-19 100.5 102 55.9
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 6.0e-18 95.5 66 62.1
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 6.0e-18 95.5 110 56.4
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.3e-16 89.4 75 56.0
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 2.8e-15 86.7 69 62.3
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 2.4e-14 83.6 115 45.2
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.4e-11 73.6 48 66.7
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 4.2e-11 72.8 65 52.3
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.1e-11 72.0 57 54.4
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 1.3e-07 61.2 90 41.1
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.3e-07 61.2 90 41.1
ClCG02G022870 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.8e-07 60.1 68 54.4
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.1e-06 58.2 50 52.0
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.0e-06 56.2 51 49.0
arahy.Tifrunner.gnm1.ann1.F7NEFJ Arachis hypogaea HOM05D004084 ORTHO05D004662 5.3e-06 55.8 66 60.6
arahy.Tifrunner.gnm1.ann1.K0L3ZW Arachis hypogaea HOM05D004084 ORTHO05D004662 5.3e-06 55.8 66 60.6
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 5.3e-06 55.8 47 46.8


User provided reference genes

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