Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 3501.1 1811 100.0
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2843.1 1812 81.0
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2820.4 1814 80.0
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2718.3 1818 76.6
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2698.3 1817 75.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2681.7 1816 75.5
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2670.2 1807 75.0
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2668.6 1836 75.4
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2667.5 1811 75.2
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2660.2 1836 75.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2655.9 1819 74.9
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2649.8 1816 74.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2646.7 1869 73.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2627.8 1815 74.3
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2608.6 1814 72.6
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2600.5 1810 73.6
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2583.5 1804 72.3
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2559.6 1810 72.5
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2528.8 1818 71.5
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2518.8 1801 70.9
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2518.4 1806 71.8
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2517.7 1815 71.1
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2513.8 1806 71.2
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2511.9 1807 70.6
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2511.5 1815 70.7
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2500.3 1813 70.7
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2499.9 1808 70.9
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2499.9 1807 71.4
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2498.0 1802 69.8
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2495.3 1806 70.9
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2485.3 1816 69.7
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2484.9 1813 69.9
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2480.3 1812 69.3
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2478.0 1827 69.6
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2474.5 1811 70.4
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2473.0 1815 70.2
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2472.2 1810 70.1
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2468.7 1804 68.0
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2457.9 1805 68.9
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2457.6 1808 70.2
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2452.2 1847 69.7
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2432.1 1814 67.2
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2426.0 1834 68.6
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2422.5 1803 67.0
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2421.0 1815 66.6
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2418.7 1817 67.7
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2418.7 2361 56.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2416.3 1823 67.5
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2416.0 1816 69.5
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2411.3 1807 67.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2410.9 1815 68.2
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2407.5 1818 67.7
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2407.5 1815 68.8
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2406.3 1810 67.5
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2404.4 1803 66.7
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2403.2 1810 67.6
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2402.5 1799 69.1
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2402.1 1810 67.6
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2401.3 1818 67.3
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2401.3 1811 68.6
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2400.2 1810 67.1
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2394.4 1804 67.5
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2390.5 1812 67.1
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2389.0 1819 66.8
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2387.1 1812 66.4
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2382.1 1809 67.4
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2361.6 1813 66.7
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2343.2 1813 65.9
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2338.5 1831 65.6
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2333.5 1822 65.7
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2322.0 1854 64.3
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2321.6 1979 61.7
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2299.6 1908 63.1
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2285.4 1823 65.0
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2191.8 1480 75.9
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2179.8 1807 62.1
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2104.7 1395 76.8
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2103.6 1807 60.1
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2070.0 1502 69.6
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1929.5 1355 71.2
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1896.3 1327 72.0
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1892.1 1306 74.0
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1864.7 1394 68.7
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1817.0 1348 70.8
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1693.7 1341 67.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1667.5 1215 71.2
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1659.8 1876 47.6
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1637.1 1820 50.3
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1586.6 1855 46.5
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1550.4 1883 46.1
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1521.5 1152 67.7
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1475.3 1098 68.8
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1446.8 1645 47.9
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1441.4 1350 59.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1323.5 1117 60.5
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1187.9 1053 58.7
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1148.7 905 64.4
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 2.5e-294 1016.5 1569 38.2
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 9.1e-289 998.0 886 57.8
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.5e-259 901.0 1737 35.2
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.5e-254 883.6 637 72.2
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.4e-244 851.3 1797 33.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.9e-236 822.4 793 53.3
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 5.3e-220 769.6 600 67.3
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.4e-218 762.7 498 76.9
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 6.3e-189 666.4 446 74.9
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 2.8e-181 641.0 698 50.3
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 4.5e-179 633.6 449 71.5
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.9e-169 601.7 449 69.9
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 6.8e-167 593.2 2023 27.2
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.5e-166 592.0 457 70.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.8e-155 553.1 499 57.3
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.1e-148 532.7 347 74.4
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 8.3e-141 506.5 315 77.8
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 2.0e-126 458.8 828 37.7
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.4e-119 436.0 367 63.5
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.6e-115 422.5 1497 25.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.3e-98 366.3 290 65.5
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 2.4e-95 355.5 298 63.1
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 9.0e-95 353.6 297 62.0
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 5.3e-79 301.2 161 90.1
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.5e-78 299.7 274 56.6
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.1e-68 266.9 195 70.8
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.1e-63 250.4 342 40.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.4e-63 250.0 339 45.4
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.2e-59 236.9 206 57.8
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 2.2e-56 226.1 163 67.5
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 5.0e-53 214.9 327 44.0
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.2e-48 199.5 190 54.7
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.7e-48 198.7 145 72.4
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-47 197.2 130 75.4
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 5.4e-47 194.9 143 72.7
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.2e-46 193.7 147 61.9
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 5.9e-46 191.4 283 43.1
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 8.9e-42 177.6 183 56.3
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 2.6e-41 176.0 183 55.7
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 3.9e-37 162.2 213 42.7
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 2.3e-34 152.9 167 53.3
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 2.6e-33 149.4 171 48.0
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 5.4e-31 141.7 143 50.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.7e-30 139.4 153 45.1
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 2.3e-29 136.3 114 63.2
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 1.4e-26 127.1 88 69.3
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 2.6e-25 122.9 168 41.7
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 3.7e-24 119.0 73 78.1
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 1.9e-23 116.7 78 73.1
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-22 113.6 145 45.5
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 8.6e-21 107.8 92 56.5
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 3.3e-20 105.9 104 54.8
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.6e-19 103.6 202 29.7
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.1e-18 100.9 157 38.9
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.3e-18 99.8 84 53.6
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 6.4e-16 91.7 78 64.1
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 1.7e-13 83.6 67 64.2
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.1e-12 80.9 113 40.7
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.3e-12 79.3 55 65.5
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 5.6e-12 78.6 60 60.0
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 8.1e-11 74.7 73 60.3
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 4.0e-10 72.4 82 41.5
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-09 69.3 117 37.6
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 1.1e-07 64.3 56 50.0
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 1.4e-07 63.9 78 48.7
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 4.2e-07 62.4 56 50.0


User provided reference genes

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