Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G138100 Manihot esculenta HOM05D008349 ORTHO05D010116 1.8e-41 172.2 87 100.0
Dinv22212 Davidia involucrata HOM05D008349 ORTHO05D010116 1.1e-14 83.2 87 60.9
Potri.009G068800 Populus trichocarpa HOM05D008349 ORTHO05D010116 7.1e-14 80.5 90 60.0
QL01p016614 Quercus lobata HOM05D008349 ORTHO05D010116 1.2e-13 79.7 86 58.1
CiPaw.13G148400 Carya illinoinensis HOM05D008349 ORTHO05D010116 1.6e-13 79.3 87 56.3
Potri.001G274200 Populus trichocarpa HOM05D008349 ORTHO05D010116 1.3e-12 76.3 89 57.3
Cfa009902 Carpinus fangiana HOM05D008349 ORTHO05D010116 3.0e-12 75.1 89 51.7
Sabra09G0051800 Salix brachista HOM05D008349 ORTHO05D010116 3.9e-12 74.7 87 58.6
Cfa019988 Carpinus fangiana HOM05D008349 ORTHO05D010116 3.3e-11 71.6 88 51.1
Hma1.2p1_0460F.1_g157620 Hydrangea macrophylla HOM05D008349 ORTHO05D010116 5.6e-11 70.9 92 52.2
arahy.Tifrunner.gnm1.ann1.K04G9P Arachis hypogaea HOM05D012946 ORTHO05D010116 1.4e-09 66.2 89 48.3
COL.COLO4_23432 Corchorus olitorius HOM05D008349 ORTHO05D010116 1.8e-09 65.9 75 57.3
Eucgr.B03753 Eucalyptus grandis HOM05D008349 ORTHO05D010116 3.1e-09 65.1 87 51.7
Haze_23263 Corylus avellana HOM05D008349 ORTHO05D010116 6.9e-09 63.9 92 50.0
arahy.Tifrunner.gnm1.ann1.Y676PW Arachis hypogaea HOM05D012946 ORTHO05D010116 9.0e-09 63.5 89 46.1
CiPaw.09G049400 Carya illinoinensis HOM05D008349 ORTHO05D010116 1.5e-08 62.8 89 51.7
Thecc.09G245500 Theobroma cacao HOM05D008349 ORTHO05D010116 2.6e-08 62.0 61 60.7
Aqoxy2G00445 Aquilegia oxysepala HOM05D008349 ORTHO05D010116 3.4e-08 61.6 82 47.6
Nn7g36871 Nelumbo nucifera HOM05D008349 ORTHO05D010116 3.4e-08 61.6 87 48.3
QL07p011743 Quercus lobata HOM05D008349 ORTHO05D010116 7.6e-08 60.5 86 44.2
CiPaw.10G041900 Carya illinoinensis HOM05D008349 ORTHO05D010116 2.9e-07 58.5 88 44.3
Phvul.006G016000 Phaseolus vulgaris HOM05D012946 ORTHO05D010116 2.9e-07 58.5 78 44.9
TAR622G0427 Trochodendron aralioides HOM05D008349 ORTHO05D010116 4.9e-07 57.8 79 50.6
TAR633G0966 Trochodendron aralioides HOM05D008349 ORTHO05D010116 4.9e-07 57.8 79 50.6
Manes.08G060951 Manihot esculenta HOM05D008349 ORTHO05D010116 6.4e-07 57.4 89 43.8
Ciclev10013196m.g Citrus clementina HOM05D008349 ORTHO05D010116 8.4e-07 57.0 77 42.9
Gohir.D08G020701 Gossypium hirsutum HOM05D040658 ORTHO05D010116 8.4e-07 57.0 47 57.4
Gohir.A08G010450 Gossypium hirsutum HOM05D040658 ORTHO05D010116 1.1e-06 56.6 47 57.4
Gorai.004G015200 Gossypium raimondii HOM05D040658 ORTHO05D010116 1.1e-06 56.6 83 48.2
Atru.chr1.1408 Acer truncatum HOM05D008349 ORTHO05D010116 1.4e-06 56.2 50 58.0
Dinv36146 Davidia involucrata HOM05D000139 ORTHO05D000103 1.4e-06 56.2 62 56.5
Lj6g0008281 Lotus japonicus HOM05D012946 ORTHO05D010116 1.4e-06 56.2 89 43.8
Phvul.001G120900 Phaseolus vulgaris HOM05D008349 ORTHO05D010116 1.9e-06 55.8 58 56.9
VMungo0540G1528 Vigna mungo HOM05D012946 ORTHO05D010116 1.9e-06 55.8 74 44.6
Medtr5g089080 Medicago truncatula HOM05D012946 ORTHO05D010116 2.4e-06 55.5 87 46.0
Glyma.20G042900 Glycine max HOM05D012946 ORTHO05D010116 3.2e-06 55.1 82 43.9


User provided reference genes

Program Settings