Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 5.6e-234 813.9 414 100.0
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 4.9e-113 412.1 416 56.5
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 5.9e-66 255.8 431 40.6
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 7.2e-64 248.8 424 41.0
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 8.7e-62 241.9 433 40.4
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.2e-49 200.7 412 37.6
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 3.8e-49 199.9 420 37.4
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 4.2e-48 196.4 420 37.1
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 7.2e-48 195.7 420 36.9
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 8.8e-46 188.7 420 35.5
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 2.0e-45 187.6 430 34.4
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 1.8e-43 181.0 432 34.0
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 5.7e-37 159.5 419 34.4
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 9.7e-37 158.7 410 31.7
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 6.3e-36 156.0 425 32.2
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 2.4e-35 154.1 420 32.9
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 9.1e-35 152.1 362 35.4
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.9e-34 149.4 413 32.4
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 8.5e-33 145.6 415 33.3
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 7.2e-32 142.5 415 31.6
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 1.4e-30 138.3 448 33.7
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 3.0e-30 137.1 409 30.1
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.5e-29 134.8 411 30.9
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 5.7e-29 132.9 427 30.4
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 2.8e-28 130.6 425 32.7
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 3.7e-28 130.2 411 27.7
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.0e-25 122.1 431 31.1
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 2.9e-25 120.6 396 31.6
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.8e-25 120.2 412 29.9
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 6.5e-25 119.4 354 29.9
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 1.5e-24 118.2 406 27.3
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.9e-24 117.9 412 29.9
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 3.2e-24 117.1 413 29.8
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 4.2e-24 116.7 407 28.3
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 5.5e-24 116.3 411 30.9
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.1e-23 114.4 286 34.3
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 2.8e-23 114.0 387 30.0
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 3.0e-22 110.5 433 28.9
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 6.8e-22 109.4 433 28.9
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 6.8e-22 109.4 283 32.2
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 1.5e-21 108.2 429 28.9
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.0e-21 107.8 409 29.8
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 2.6e-21 107.5 167 40.1
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 3.4e-21 107.1 416 28.8
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 3.4e-21 107.1 413 29.1
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 7.5e-21 105.9 424 26.4
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 1.7e-20 104.8 412 28.2
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 8.3e-20 102.4 412 28.2
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 2.7e-18 97.4 83 55.4
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 5.9e-18 96.3 401 27.4
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 7.8e-18 95.9 232 34.9
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 7.8e-18 95.9 423 25.8
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 7.8e-18 95.9 356 29.2
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 1.0e-17 95.5 280 32.1
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.7e-17 94.7 403 28.8
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 2.3e-17 94.4 414 26.3
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 6.6e-17 92.8 133 41.4
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.9e-16 91.3 245 33.9
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 2.5e-16 90.9 264 30.7
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 3.6e-15 87.0 226 32.3
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 2.3e-14 84.3 417 25.4
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 2.3e-14 84.3 422 26.5
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 5.2e-14 83.2 392 27.0
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 6.8e-14 82.8 405 25.9
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 8.9e-14 82.4 412 26.5
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 1.5e-13 81.6 229 31.4
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 5.7e-13 79.7 416 24.5
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 3.7e-12 77.0 397 25.7
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 4.9e-12 76.6 234 29.5
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 4.9e-12 76.6 191 34.0
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.8e-11 74.7 330 25.2
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 4.1e-11 73.6 250 29.2
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 5.4e-11 73.2 412 25.7
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 7.8e-10 69.3 196 30.1
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 7.8e-10 69.3 98 42.9
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 3.0e-09 67.4 211 29.9
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 4.7e-07 60.1 365 25.2
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 2.3e-06 57.8 213 27.7
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 5.2e-06 56.6 148 31.8


User provided reference genes

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