Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 0.0e+00 1119.4 572 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 7.2e-240 833.9 522 79.3
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.8e-236 822.0 522 79.1
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.2e-233 812.4 522 76.8
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.5e-232 808.9 520 76.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.0e-230 802.0 518 77.8
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.6e-229 798.9 521 75.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.8e-228 794.7 518 76.1
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 5.3e-227 791.2 522 74.1
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 6.5e-225 784.3 522 74.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.2e-224 781.6 524 75.8
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.1e-223 779.2 520 74.2
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 8.0e-223 777.3 548 73.7
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 8.8e-222 773.9 518 74.1
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.7e-221 771.2 521 73.5
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 7.5e-221 770.8 518 73.4
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 3.7e-220 768.5 524 72.5
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 6.3e-220 767.7 543 70.7
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.4e-219 766.5 524 72.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 7.7e-218 760.8 519 73.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 5.0e-217 758.1 522 71.5
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 3.3e-216 755.4 518 72.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.2e-215 753.4 523 71.7
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.0e-214 750.4 518 71.8
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 1.5e-213 746.5 522 71.6
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 3.4e-213 745.3 517 70.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.8e-212 742.3 516 71.3
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 3.7e-212 741.9 521 70.4
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 5.4e-211 738.0 518 70.8
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.4e-211 738.0 518 71.2
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 7.0e-211 737.6 518 70.8
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.2e-210 736.9 521 70.8
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.5e-210 734.9 518 70.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.0e-209 731.5 528 69.7
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 5.0e-209 731.5 517 70.0
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 8.6e-209 730.7 522 70.3
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.9e-208 729.6 518 70.5
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.0e-206 723.8 518 69.3
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 1.5e-205 719.9 522 68.0
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.0e-205 719.5 524 68.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 2.6e-205 719.2 516 67.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 5.8e-205 718.0 517 68.9
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 4.9e-204 714.9 522 70.1
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 8.3e-204 714.1 522 68.6
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.1e-203 713.8 521 68.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 4.1e-203 711.8 516 69.2
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.2e-202 710.3 522 67.0
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.7e-202 709.1 515 70.1
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.7e-201 706.4 522 66.1
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.7e-201 706.4 714 55.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.3e-201 706.1 522 68.6
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-201 706.1 522 68.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 8.6e-201 704.1 519 68.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.9e-200 703.0 519 67.1
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.9e-200 703.0 522 68.0
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 6.2e-199 698.0 521 67.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.8e-198 696.4 530 64.0
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 3.1e-198 695.7 524 65.8
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 8.9e-198 694.1 517 67.9
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-197 693.7 506 68.4
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.5e-197 693.3 543 63.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.5e-197 693.3 517 66.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.0e-197 693.0 528 66.3
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.4e-197 691.8 541 63.0
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 6.4e-196 688.0 574 61.8
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.4e-195 686.8 554 61.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.4e-195 686.8 518 66.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 2.4e-195 686.0 526 63.5
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.2e-195 685.6 549 61.6
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 4.1e-195 685.3 508 68.3
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 5.4e-195 684.9 525 63.0
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.0e-195 684.5 518 66.6
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.1e-194 682.9 525 63.2
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-194 682.6 549 61.2
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 2.7e-194 682.6 518 64.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 6.0e-194 681.4 525 62.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 7.8e-194 681.0 562 61.2
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.0e-193 679.1 542 62.4
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.1e-192 677.2 541 61.4
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.5e-192 676.8 514 63.8
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.1e-190 670.6 527 62.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.3e-190 669.5 526 63.3
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 2.7e-186 656.0 495 65.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.5e-186 655.6 528 63.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.0e-181 639.8 476 68.9
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 5.4e-179 631.7 544 61.9
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 7.1e-179 631.3 487 64.5
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 9.2e-179 630.9 472 66.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 5.4e-171 605.1 527 58.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 5.6e-168 595.1 450 64.9
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.2e-164 583.2 521 57.0
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.4e-163 580.5 520 56.5
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.5e-162 575.9 545 55.4
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.6e-159 567.0 356 78.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.0e-157 560.1 470 62.8
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 3.8e-156 555.8 515 54.4
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.9e-139 500.4 533 51.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.1e-122 443.7 441 52.4
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 6.3e-119 432.2 304 71.1
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 1.2e-117 427.9 506 44.5
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 2.0e-117 427.2 303 68.6
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.7e-116 424.1 514 45.3
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.7e-114 416.8 515 45.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 5.2e-113 412.5 335 61.8
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 3.2e-107 393.3 520 42.3
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 9.2e-86 322.0 216 75.0
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.8e-81 307.8 216 73.6
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 4.1e-78 296.6 338 49.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 4.4e-72 276.6 587 31.3
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 6.0e-69 266.2 181 75.1
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.1e-68 263.1 396 35.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.5e-67 261.5 204 63.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.4e-64 250.0 269 46.5
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.4e-62 243.0 210 57.6
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.1e-46 192.2 145 65.5
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 7.4e-43 179.5 112 75.9
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.6e-42 178.3 123 66.7
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.7e-37 161.0 126 68.3
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.9e-31 141.0 249 36.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-30 139.0 107 62.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.2e-30 137.1 112 62.5
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 2.8e-26 124.4 570 22.6
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.9e-24 116.7 98 50.0
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 7.7e-24 116.3 102 54.9
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.3e-23 115.5 216 33.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.8e-23 114.0 128 46.1
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.8e-23 114.0 74 74.3
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 5.0e-23 113.6 136 42.6
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 5.1e-20 103.6 80 57.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.3e-19 100.5 104 47.1
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 9.7e-19 99.4 80 56.2
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.8e-18 97.1 83 53.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.2e-14 84.3 106 42.5
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.6e-13 82.0 97 45.4
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 7.9e-13 79.7 241 26.1
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 7.9e-13 79.7 61 57.4
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.4e-12 79.0 58 70.7
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.5e-11 75.5 51 66.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 8.2e-10 69.7 138 35.5
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 1.3e-07 62.4 403 23.8
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 1.9e-06 58.5 75 50.7


User provided reference genes

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