Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 5.6e-98 360.9 180 100.0
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 5.5e-77 291.2 179 81.0
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 3.3e-74 282.0 176 76.7
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.3e-74 281.6 202 70.3
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.7e-73 278.5 176 75.6
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 4.8e-73 278.1 176 75.6
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.5e-71 271.6 179 74.9
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 5.1e-67 258.1 180 71.7
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 2.2e-65 252.7 176 68.8
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.1e-64 250.4 179 70.9
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.0e-63 246.1 173 69.9
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 1.8e-59 233.0 177 66.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 8.8e-59 230.7 177 66.1
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.5e-58 229.9 177 66.7
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.5e-58 229.9 176 67.0
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 1.5e-58 229.9 179 63.7
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.6e-58 229.2 175 65.1
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 7.4e-58 227.6 178 67.4
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 2.2e-57 226.1 180 66.1
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.8e-57 225.7 180 66.1
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 3.7e-57 225.3 152 69.7
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 6.3e-57 224.6 177 65.0
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 8.2e-57 224.2 175 67.4
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.1e-56 223.8 180 64.4
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.4e-56 223.4 176 62.5
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.4e-56 223.4 176 62.5
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 3.1e-56 222.2 180 63.3
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.1e-56 222.2 180 65.0
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 4.1e-56 221.9 179 65.4
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 4.1e-56 221.9 175 62.9
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 4.1e-56 221.9 176 63.6
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 6.9e-56 221.1 179 63.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 6.9e-56 221.1 253 51.0
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.2e-55 220.3 176 63.6
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.5e-55 219.9 176 63.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 2.0e-55 219.5 179 63.1
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 2.6e-55 219.2 177 63.8
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 3.4e-55 218.8 180 62.8
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 3.4e-55 218.8 175 63.4
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 7.7e-55 217.6 176 63.6
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.3e-54 216.9 180 61.7
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.7e-54 216.5 175 64.0
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 2.2e-54 216.1 178 64.6
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 3.8e-54 215.3 176 62.5
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 6.5e-54 214.5 177 63.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 6.5e-54 214.5 178 59.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-53 213.8 178 62.4
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 62.7
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 1.9e-53 213.0 125 83.2
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.9e-53 213.0 175 64.0
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 63.6
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 4.2e-53 211.8 178 55.1
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 5.5e-53 211.5 180 60.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 7.2e-53 211.1 177 63.8
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 7.2e-53 211.1 180 62.2
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 61.9
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 61.9
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 60.5
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 2.1e-52 209.5 175 63.4
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 2.1e-52 209.5 174 63.2
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 2.7e-52 209.1 178 59.6
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.7e-52 209.1 117 84.6
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 2.7e-52 209.1 176 61.9
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.7e-52 208.4 177 62.1
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 6.1e-52 208.0 176 60.2
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 6.1e-52 208.0 177 62.7
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 6.1e-52 208.0 175 61.1
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 6.1e-52 208.0 175 61.1
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.0e-51 207.2 177 62.7
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.0e-51 207.2 180 59.4
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.4e-51 206.8 175 60.6
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.8e-51 206.5 177 62.1
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 3.9e-51 205.3 180 60.6
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 6.7e-51 204.5 175 60.6
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 8.8e-51 204.1 175 60.6
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 8.8e-51 204.1 175 60.6
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.1e-50 203.8 177 55.9
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 2.0e-50 203.0 180 59.4
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 2.6e-50 202.6 180 58.9
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.3e-50 202.2 175 60.0
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 60.8
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.2e-49 199.5 175 60.0
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.8e-49 199.1 180 57.8
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 6.3e-49 198.0 180 57.2
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.8e-48 196.4 175 59.4
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.4e-48 196.1 180 57.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 3.1e-48 195.7 177 58.2
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 5.9e-47 191.4 175 56.6
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 7.7e-47 191.0 175 57.1
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.0e-46 190.7 117 72.6
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.0e-46 190.7 176 54.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 1.7e-46 189.9 205 50.2
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.7e-46 189.9 175 57.1
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 5.0e-46 188.3 202 52.0
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 3.2e-45 185.7 156 62.2
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 9.4e-45 184.1 180 55.6
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.0e-43 180.6 175 56.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.0e-43 180.6 174 54.0
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.8e-43 179.9 176 53.4
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 2.0e-42 176.4 139 64.0
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.2e-41 172.9 117 70.1
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.8e-40 169.9 139 59.7
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.4e-40 169.5 193 51.3
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.4e-40 169.5 166 54.8
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.6e-39 166.8 146 59.6
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.2e-38 162.9 129 62.8
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 8.5e-38 161.0 215 47.0
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 9.4e-37 157.5 176 49.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.2e-36 157.1 139 56.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.6e-36 156.8 144 56.9
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.7e-36 156.0 178 49.4
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 6.1e-36 154.8 99 74.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.4e-35 153.7 116 61.2
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.7e-33 146.7 141 55.3
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.8e-33 145.2 85 78.8
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.1e-32 144.1 168 48.2
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.2e-31 140.6 90 74.4
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 4.5e-31 138.7 90 73.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.3e-30 136.3 89 73.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.5e-29 132.9 90 72.2
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 8.3e-25 117.9 93 61.3
Haze_10727 Corylus avellana HOM05D006436 ORTHO05D008011 5.6e-13 78.6 54 66.7
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 1.3e-09 67.4 36 86.1
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.1e-08 62.4 36 77.8
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 7.0e-08 61.6 51 58.8
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 6.0e-07 58.5 36 75.0
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 7.8e-07 58.2 51 52.9
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-06 57.4 36 69.4


User provided reference genes

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