Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G134400 Manihot esculenta HOM05D006216 ORTHO05D007760 4.9e-224 780.8 389 100.0
Manes.01G176400 Manihot esculenta HOM05D006216 ORTHO05D007760 5.5e-207 724.2 389 92.0
Potri.001G225100 Populus trichocarpa HOM05D006216 ORTHO05D007760 2.7e-182 642.1 392 82.1
Potri.009G021800 Populus trichocarpa HOM05D006216 ORTHO05D007760 2.4e-178 629.0 393 80.4
Dinv29341 Davidia involucrata HOM05D006216 ORTHO05D007760 5.9e-177 624.4 406 77.8
TWI31G0496 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 1.1e-175 620.2 382 79.6
Lj6g0023824 Lotus japonicus HOM05D006216 ORTHO05D007760 4.7e-174 614.8 394 77.9
TWI75G0612 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 8.0e-174 614.0 392 77.6
Sabra16G0133700 Salix brachista HOM05D006216 ORTHO05D007760 1.0e-173 613.6 444 72.5
QL01p020730 Quercus lobata HOM05D006216 ORTHO05D007760 2.3e-173 612.5 398 75.6
Thecc.09G251000 Theobroma cacao HOM05D006216 ORTHO05D007760 3.0e-173 612.1 389 78.1
Haze_23545 Corylus avellana HOM05D006216 ORTHO05D007760 5.2e-173 611.3 396 75.8
GSVIVG01037382001 Vitis vinifera HOM05D006216 ORTHO05D007760 1.1e-172 610.1 391 78.0
Cfa010159 Carpinus fangiana HOM05D006216 ORTHO05D007760 1.5e-172 609.8 397 76.1
CiPaw.13G146100 Carya illinoinensis HOM05D006216 ORTHO05D007760 7.4e-172 607.4 396 76.5
Hma1.2p1_1843F.1_g305010 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 9.7e-172 607.1 402 76.1
Gohir.D07G123300 Gossypium hirsutum HOM05D006216 ORTHO05D007760 4.8e-171 604.7 377 79.3
Gohir.A07G119000 Gossypium hirsutum HOM05D006216 ORTHO05D007760 4.1e-170 601.7 377 79.0
arahy.Tifrunner.gnm1.ann1.G3L2E7 Arachis hypogaea HOM05D006216 ORTHO05D007760 7.0e-170 600.9 397 76.6
Ca_13675_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 1.6e-169 599.7 388 76.5
Gorai.001G133000 Gossypium raimondii HOM05D006216 ORTHO05D007760 1.6e-169 599.7 380 78.7
Ciclev10015579m.g Citrus clementina HOM05D006216 ORTHO05D007760 2.0e-169 599.4 391 75.7
CSS0031944 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 2.6e-169 599.0 390 77.4
Duzib168G1114 Durio zibethinus HOM05D006216 ORTHO05D007760 4.5e-169 598.2 389 77.6
RcHm_v2.0_Chr5g0050131 Rosa chinensis HOM05D006216 ORTHO05D007760 4.5e-169 598.2 391 76.5
Lalb_Chr18g0048331 Lupinus albus HOM05D006216 ORTHO05D007760 7.7e-169 597.4 398 75.9
TPR.G11861 Trifolium pratense HOM05D006216 ORTHO05D007760 1.0e-168 597.0 397 75.8
PGR119G0354 Punica granatum HOM05D006216 ORTHO05D007760 1.7e-168 596.3 398 75.1
Sopen01g004500 Solanum pennellii HOM05D006216 ORTHO05D007760 2.2e-168 595.9 401 75.1
Phvul.006G019500 Phaseolus vulgaris HOM05D006216 ORTHO05D007760 2.9e-168 595.5 397 74.6
Solyc01g009010.3 Solanum lycopersicum HOM05D006216 ORTHO05D007760 3.8e-168 595.1 401 75.3
VMungo1215G0750 Vigna mungo HOM05D006216 ORTHO05D007760 5.0e-168 594.7 396 75.5
PGSC0003DMG400022703 Solanum tuberosum HOM05D006216 ORTHO05D007760 8.5e-168 594.0 401 75.1
TAR633G2593 Trochodendron aralioides HOM05D006216 ORTHO05D007760 1.1e-167 593.6 406 74.4
CANSAT54G1188 Cannabis sativa HOM05D006216 ORTHO05D007760 2.5e-167 592.4 392 75.8
Actinidia07007 Actinidia chinensis HOM05D006216 ORTHO05D007760 7.2e-167 590.9 404 74.5
vmacro04357 Vaccinium macrocarpon HOM05D006216 ORTHO05D007760 2.1e-166 589.3 400 75.2
Nitab4.5_0002300g0020 Nicotiana tabacum HOM05D006216 ORTHO05D007760 1.4e-165 586.6 387 76.2
Glyma.13G072700 Glycine max HOM05D006216 ORTHO05D007760 1.8e-165 586.3 397 74.6
Glyma.20G046800 Glycine max HOM05D006216 ORTHO05D007760 2.3e-165 585.9 397 75.1
THA.LOC104816956 Tarenaya hassleriana HOM05D006216 ORTHO05D007760 4.0e-165 585.1 385 76.4
Lj2A825T28 Lonicera japonica HOM05D006216 ORTHO05D007760 5.2e-165 584.7 407 73.5
MD03G1163100 Malus domestica HOM05D006216 ORTHO05D007760 5.2e-165 584.7 404 75.2
Lalb_Chr15g0080191 Lupinus albus HOM05D006216 ORTHO05D007760 8.8e-165 583.9 388 75.0
Medtr3g437340 Medicago truncatula HOM05D006216 ORTHO05D007760 8.8e-165 583.9 386 75.6
CSS0004136 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 1.5e-164 583.2 409 73.6
Sp4g08430 Schrenkiella parvula HOM05D006216 ORTHO05D007760 3.4e-164 582.0 381 76.4
Sed0006982 Sechium edule HOM05D006216 ORTHO05D007760 3.4e-164 582.0 396 75.0
MELO3C015605.2 Cucumis melo HOM05D006216 ORTHO05D007760 1.7e-163 579.7 391 75.4
CsaV3_1G041900 Cucumis sativus L. HOM05D006216 ORTHO05D007760 1.7e-163 579.7 391 75.4
ECA238G2733 Erigeron canadensis HOM05D006216 ORTHO05D007760 2.2e-163 579.3 387 74.9
Thhalv10002004m.g Eutrema salsugineum HOM05D006216 ORTHO05D007760 2.2e-163 579.3 350 80.9
MSTRG.12426 Avicennia marina HOM05D006216 ORTHO05D007760 2.8e-163 578.9 403 72.2
A07p17910 Brassica napus HOM05D006216 ORTHO05D007760 1.1e-162 577.0 376 75.8
BraA07t29509Z Brassica rapa HOM05D006216 ORTHO05D007760 1.1e-162 577.0 376 75.8
Sc04g0009550 Simmondsia chinensis HOM05D006216 ORTHO05D007760 1.8e-162 576.2 395 73.2
FAN21G1147 Fragaria x ananassa HOM05D006216 ORTHO05D007760 2.4e-162 575.9 350 80.6
BcaB02g10053 Brassica carinata HOM05D006216 ORTHO05D007760 4.1e-162 575.1 380 75.3
SalBow6G4438 Salvia bowleyana HOM05D006216 ORTHO05D007760 4.1e-162 575.1 391 74.2
BcaC02g10847 Brassica carinata HOM05D006216 ORTHO05D007760 5.3e-162 574.7 335 82.7
C04p24560 Brassica napus HOM05D006216 ORTHO05D007760 5.3e-162 574.7 335 82.7
BolC4t23960H Brassica oleracea HOM05D006216 ORTHO05D007760 5.3e-162 574.7 335 82.4
FvH4_3g27650 Fragaria vesca HOM05D006216 ORTHO05D007760 5.3e-162 574.7 350 80.3
FAN11G0826 Fragaria x ananassa HOM05D006216 ORTHO05D007760 5.3e-162 574.7 350 80.3
CARHR119100 Cardamine hirsuta HOM05D006216 ORTHO05D007760 9.1e-162 573.9 336 82.7
arahy.Tifrunner.gnm1.ann1.CPM77E Arachis hypogaea HOM05D006216 ORTHO05D007760 1.2e-161 573.5 340 83.2
FAN25G0225 Fragaria x ananassa HOM05D006216 ORTHO05D007760 2.0e-161 572.8 350 80.3
CAN.G714.2 Capsicum annuum HOM05D006216 ORTHO05D007760 3.5e-161 572.0 406 71.9
Cc01_g07140 Coffea canephora HOM05D006216 ORTHO05D007760 5.9e-161 571.2 408 71.6
AUR62024257 Chenopodium quinoa HOM05D006216 ORTHO05D007760 1.0e-160 570.5 385 75.1
PSO339G5720 Papaver somniferum HOM05D006216 ORTHO05D007760 1.0e-160 570.5 409 71.6
AT2G26930 Arabidopsis thaliana HOM05D006216 ORTHO05D007760 1.3e-160 570.1 369 77.0
Peaxi162Scf00050g02022 Petunia axillaris HOM05D006216 ORTHO05D007760 1.3e-160 570.1 406 72.4
Psat5g182280 Pisum sativum HOM05D006216 ORTHO05D007760 1.7e-160 569.7 391 73.7
AL4G20170 Arabidopsis lyrata HOM05D006216 ORTHO05D007760 5.0e-160 568.2 358 78.2
PSO384G3582 Papaver somniferum HOM05D006216 ORTHO05D007760 5.0e-160 568.2 409 71.1
Carub.0004s0743 Capsella rubella HOM05D006216 ORTHO05D007760 8.5e-160 567.4 384 75.3
Rhsim13G0202500 Rhododendron simsii HOM05D006216 ORTHO05D007760 2.5e-159 565.8 400 74.5
HanXRQChr14g0433421 Helianthus annuus HOM05D006216 ORTHO05D007760 7.2e-159 564.3 384 74.7
Nn7g37015 Nelumbo nucifera HOM05D006216 ORTHO05D007760 2.7e-158 562.4 371 76.3
Hund25392 Selenicereus undatus HOM05D006216 ORTHO05D007760 3.6e-158 562.0 399 71.7
AUR62005484 Chenopodium quinoa HOM05D006216 ORTHO05D007760 1.0e-157 560.5 324 84.0
Eucgr.J00662 Eucalyptus grandis HOM05D006216 ORTHO05D007760 3.0e-157 558.9 382 73.6
Lsat_1_v5_gn_2_36221 Lactuca sativa HOM05D006216 ORTHO05D007760 8.8e-157 557.4 384 74.0
Migut.D00703 Erythranthe guttata HOM05D006216 ORTHO05D007760 3.7e-155 552.0 390 70.5
Aa31LG5G8850 Aethionema arabicum HOM05D006216 ORTHO05D007760 1.4e-154 550.1 382 71.7
ClCG03G014320 Citrullus lanatus HOM05D006216 ORTHO05D007760 1.3e-152 543.5 391 72.1
SGA_v2.0_scaffold79G25547 Striga asiatica HOM05D006216 ORTHO05D007760 2.3e-152 542.7 418 69.1
Aqoxy1G00047 Aquilegia oxysepala HOM05D006216 ORTHO05D007760 6.6e-152 541.2 396 69.9
MSTRG.21323 Avicennia marina HOM05D006216 ORTHO05D007760 6.6e-152 541.2 389 70.4
Zm00001eb150630 Zea mays HOM05D006216 ORTHO05D007760 1.1e-151 540.4 361 74.2
ATR0782G058 Amborella trichopoda HOM05D006216 ORTHO05D007760 1.9e-151 539.7 325 79.1
CDE08G0663 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 5.5e-151 538.1 370 75.4
Os01g0802100 Oryza sativa ssp. japonica HOM05D006216 ORTHO05D007760 2.1e-150 536.2 337 77.2
EL10Ac6g13846 Beta vulgaris HOM05D006216 ORTHO05D007760 5.4e-146 521.5 399 67.4
Nitab4.5_0000428g0050 Nicotiana tabacum HOM05D006216 ORTHO05D007760 7.0e-146 521.2 429 65.3
CDE09G0516 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 1.6e-145 520.0 398 69.8
Atru.BG.104.p Acer truncatum HOM05D006216 ORTHO05D007760 5.9e-145 518.1 299 84.9
Migut.N02401 Erythranthe guttata HOM05D006216 ORTHO05D007760 2.9e-144 515.8 375 70.7
DCAR_006327 Daucus carota HOM05D006216 ORTHO05D007760 3.3e-143 512.3 397 68.3
Atru.chr3.2830 Acer truncatum HOM05D006216 ORTHO05D007760 4.3e-143 511.9 333 77.8
unitig_27.g25131 Utricularia gibba HOM05D006216 ORTHO05D007760 1.9e-138 496.5 305 80.0
HPP92_001661 Vanilla planifolia HOM05D006216 ORTHO05D007760 5.0e-136 488.4 358 69.8
Pp3c26_490 Physcomitrium patens HOM05D006216 ORTHO05D007760 1.6e-129 466.8 324 68.8
Hma1.2p1_1843F.1_g305000 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 3.0e-128 462.6 308 76.0
SMO367G1046 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 3.0e-128 462.6 323 69.0
Mapoly0033s0031 Marchantia polymorpha HOM05D006216 ORTHO05D007760 1.1e-125 454.1 333 66.1
CBR_g22270 Chara braunii HOM05D006216 ORTHO05D007760 3.1e-125 452.6 321 67.0
MBI19_g37419_MAGBIO Magnolia biondii HOM05D006216 ORTHO05D007760 3.8e-115 419.1 337 64.7
Prupe.4G269400 Prunus persica HOM05D006216 ORTHO05D007760 9.6e-111 404.4 270 75.2
AagrBONN_evm.TU.Sc2ySwM_228.3849 Anthoceros agrestis HOM05D006216 ORTHO05D007760 4.4e-108 395.6 282 68.4
Sabra09G0013700 Salix brachista HOM05D006216 ORTHO05D007760 7.1e-90 335.1 308 62.0
MCO08G209 Micromonas commoda HOM05D006216 ORTHO05D007760 2.7e-89 333.2 296 55.4
Cre02.g145050 Chlamydomonas reinhardtii HOM05D006216 ORTHO05D007760 3.3e-87 326.2 292 55.5
PRCOL_00004294 Prasinoderma coloniale HOM05D006216 ORTHO05D007760 3.5e-81 306.2 300 49.7
SEGI_15556 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 1.7e-70 270.8 241 59.8
Glyma.17G179800 Glycine max HOM05D006216 ORTHO05D007760 2.3e-64 250.4 181 72.9
Hund17544 Selenicereus undatus HOM05D006216 ORTHO05D007760 8.8e-56 221.9 186 60.2
SEGI_04634 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 2.0e-52 210.7 130 75.4
FAN26G0546 Fragaria x ananassa HOM05D006216 ORTHO05D010609 5.9e-44 182.6 124 72.6
SMO332G0003 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 4.7e-33 146.4 102 67.6
SMO332G0042 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 1.6e-25 121.3 149 49.0
Oeu063625.1 Olea europaea HOM05D006216 ORTHO05D007760 6.0e-20 102.8 124 48.4
Hund00952 Selenicereus undatus HOM05D006216 ORTHO05D007760 5.0e-19 99.8 74 67.6
SMO198G0007 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 6.6e-19 99.4 106 50.0
Ca_29165_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 5.6e-18 96.3 158 39.2
DCAR_006325 Daucus carota HOM05D006216 ORTHO05D007760 1.1e-16 92.0 62 64.5


User provided reference genes

Program Settings