Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 1.8e-110 404.1 204 100.0
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 1.6e-66 258.1 197 68.0
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.1e-65 255.4 199 65.3
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 2.3e-65 254.2 198 65.7
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 3.1e-65 253.8 197 64.5
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 3.1e-65 253.8 197 64.5
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.5e-64 251.5 197 64.0
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 7.5e-64 249.2 197 66.0
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 2.9e-63 247.3 198 65.2
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 4.9e-63 246.5 198 63.6
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 8.3e-63 245.7 197 63.5
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.2e-61 241.9 189 64.0
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 3.5e-61 240.4 198 62.6
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 7.8e-61 239.2 197 61.9
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 1.0e-60 238.8 206 61.2
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 5.6e-59 233.0 199 59.8
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 7.3e-59 232.6 189 61.4
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 3.6e-58 230.3 199 59.3
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 4.7e-58 229.9 189 61.4
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 6.8e-57 226.1 189 60.3
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 2.0e-56 224.6 199 60.8
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 2.0e-56 224.6 190 60.5
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.6e-56 224.2 189 59.8
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 9.9e-56 222.2 189 62.4
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 2.9e-55 220.7 197 57.4
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.9e-55 220.7 197 62.4
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.1e-54 218.8 198 59.6
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.1e-54 218.8 198 59.6
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 1.4e-54 218.4 201 56.2
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 1.9e-54 218.0 197 57.9
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 3.2e-54 217.2 204 57.8
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 9.2e-54 215.7 201 55.7
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.2e-53 215.3 199 58.3
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.6e-53 214.9 198 58.1
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.6e-53 214.9 196 57.7
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 6.0e-53 213.0 200 60.5
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 1.0e-52 212.2 199 57.3
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 1.0e-52 212.2 202 54.0
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 1.3e-52 211.8 201 50.7
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 1.3e-52 211.8 197 57.9
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 2.3e-52 211.1 201 56.7
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 5.1e-52 209.9 201 54.7
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 8.6e-52 209.1 201 55.7
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.9e-51 208.0 204 55.4
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 5.6e-51 206.5 201 53.7
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 6.2e-50 203.0 190 61.1
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 8.1e-50 202.6 199 54.3
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.8e-49 201.4 198 54.5
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 4.0e-49 200.3 180 56.7
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 4.0e-49 200.3 204 52.9
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 9.0e-49 199.1 200 55.0
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 1.5e-48 198.4 200 55.0
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 2.6e-48 197.6 197 52.3
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 5.8e-48 196.4 189 55.6
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.7e-47 194.9 197 52.8
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 2.2e-47 194.5 198 53.0
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 2.2e-47 194.5 197 51.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 6.4e-47 193.0 204 49.5
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 5.4e-46 189.9 198 51.5
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 5.4e-46 189.9 198 51.5
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.7e-44 184.9 199 52.3
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.1e-43 182.2 200 45.5
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 4.8e-42 176.8 150 60.7
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 1.2e-40 172.2 199 46.7
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.5e-40 171.8 204 46.6
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 5.8e-40 169.9 202 47.5
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 7.1e-38 162.9 183 53.0
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.7e-37 161.0 207 49.3
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 2.1e-34 151.4 197 46.2
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 5.3e-33 146.7 110 61.8
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 9.3e-30 136.0 188 42.6
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 2.7e-29 134.4 169 47.3
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 1.3e-28 132.1 199 42.7
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 6.7e-28 129.8 210 44.3
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 1.1e-27 129.0 201 37.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 4.3e-27 127.1 105 57.1
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 7.4e-27 126.3 150 46.7
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 6.5e-23 113.2 81 64.2
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 6.5e-23 113.2 81 64.2
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.1e-22 112.5 150 43.3
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 5.7e-19 100.1 81 56.8
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 3.7e-18 97.4 81 55.6
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 1.5e-16 92.0 81 50.6
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.0e-15 89.4 81 45.7
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 7.2e-14 83.2 78 48.7
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 2.1e-13 81.6 55 67.3
COL.COLO4_21446 Corchorus olitorius HOM05D007383 ORTHO05D009254 4.6e-13 80.5 126 37.3
Thecc.03G003000 Theobroma cacao HOM05D007383 ORTHO05D009254 1.9e-11 75.1 128 35.2
Duzib084G1098 Durio zibethinus HOM05D007383 ORTHO05D009254 9.7e-11 72.8 166 30.1
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.1e-09 69.3 185 29.2
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.8e-09 68.6 164 28.0
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.8e-09 68.6 185 27.6
Ciclev10019863m.g Citrus clementina HOM05D007383 ORTHO05D009254 2.4e-09 68.2 199 29.1
Ah.01g024620 Amaranthus hybridus HOM05D007383 ORTHO05D009254 6.9e-09 66.6 136 34.6
AUR62030852 Chenopodium quinoa HOM05D007383 ORTHO05D009254 6.9e-09 66.6 126 34.1
THA.LOC104803714 Tarenaya hassleriana HOM05D007383 ORTHO05D009254 9.1e-09 66.2 125 31.2
AUR62027012 Chenopodium quinoa HOM05D007383 ORTHO05D009254 1.5e-08 65.5 126 34.1
Atru.chr9.2397 Acer truncatum HOM05D007383 ORTHO05D009254 2.6e-08 64.7 93 36.6
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 2.6e-08 64.7 176 33.0
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 4.5e-08 63.9 166 30.7
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 4.5e-08 63.9 166 30.7
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 1.0e-07 62.8 166 30.1
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 1.7e-07 62.0 143 31.5
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 2.2e-07 61.6 141 29.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.9e-07 61.2 187 26.2
CARHR107690 Cardamine hirsuta HOM05D006556 ORTHO05D008146 3.8e-07 60.8 132 31.8
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 3.8e-07 60.8 83 37.3
DCAR_016510 Daucus carota HOM05D007383 ORTHO05D009254 5.0e-07 60.5 111 29.7
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 5.0e-07 60.5 139 26.6
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.5e-07 60.1 97 29.9
CAN.G322.86 Capsicum annuum HOM05D007083 ORTHO05D008801 6.5e-07 60.1 146 26.0
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 6.5e-07 60.1 185 27.6
CDE10G1349 Ceratophyllum demersum HOM05D007383 ORTHO05D009254 1.1e-06 59.3 105 33.3
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 1.1e-06 59.3 110 29.1
Solyc01g109060.4 Solanum lycopersicum HOM05D007083 ORTHO05D008801 1.4e-06 58.9 162 27.8
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 1.9e-06 58.5 175 29.7
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.9e-06 58.5 112 33.9
PSO675G0716 Papaver somniferum HOM05D000162 ORTHO05D000090 1.9e-06 58.5 134 26.9
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 3.2e-06 57.8 186 26.3
AL3G50480 Arabidopsis lyrata HOM05D006556 ORTHO05D008146 3.2e-06 57.8 132 29.5
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 3.2e-06 57.8 107 31.8
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 3.2e-06 57.8 100 32.0
Sopen01g051260 Solanum pennellii HOM05D007083 ORTHO05D008801 3.2e-06 57.8 159 27.0
SGA_v2.0_scaffold196G40934 Striga asiatica HOM05D007383 ORTHO05D009254 3.2e-06 57.8 111 30.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.2e-06 57.8 183 27.9
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 4.2e-06 57.4 100 31.0
HPP92_020726 Vanilla planifolia HOM05D000891 ORTHO05D000761 4.2e-06 57.4 102 35.3
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 5.5e-06 57.0 113 34.5
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 5.5e-06 57.0 104 31.7
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 5.5e-06 57.0 190 26.3
Carub.0003s3161 Capsella rubella HOM05D006556 ORTHO05D008146 7.2e-06 56.6 132 29.5
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 7.2e-06 56.6 159 30.2
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 7.2e-06 56.6 87 34.5
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 7.2e-06 56.6 171 27.5
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 7.2e-06 56.6 170 32.4
VMungo0331G0487 Vigna mungo HOM05D000300 ORTHO05D000383 7.2e-06 56.6 96 32.3
ATR0807G010 Amborella trichopoda HOM05D006556 ORTHO05D008146 9.4e-06 56.2 119 27.7
Sp3g30890 Schrenkiella parvula HOM05D001265 ORTHO05D008146 9.4e-06 56.2 132 29.5
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 9.4e-06 56.2 200 27.0


User provided reference genes

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