Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 5.1e-213 744.2 391 100.0
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.8e-101 373.6 397 55.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 1.8e-101 373.6 393 56.2
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 2.5e-87 326.6 401 51.9
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.3e-85 318.9 443 47.9
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.5e-84 317.4 375 51.7
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-79 300.1 380 51.3
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 3.7e-78 296.2 370 50.8
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.2e-76 291.2 398 49.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.2e-76 291.2 364 50.5
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.6e-76 290.8 401 48.9
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.1e-71 274.6 372 48.9
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 1.7e-70 270.8 451 43.2
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 8.2e-70 268.5 383 48.3
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 8.2e-70 268.5 385 47.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 8.2e-70 268.5 377 47.7
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 4.1e-69 266.2 402 45.0
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 2.7e-68 263.5 402 47.0
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.8e-67 259.6 371 47.4
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 3.8e-67 259.6 376 47.6
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.6e-65 254.2 388 46.1
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 3.6e-65 253.1 451 43.0
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.0e-64 250.0 440 43.4
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 6.8e-64 248.8 389 44.5
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.0e-63 247.3 350 48.0
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.7e-59 234.2 425 40.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.5e-58 231.1 458 38.9
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 9.5e-58 228.4 438 42.7
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 6.1e-57 225.7 501 39.1
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 3.0e-56 223.4 388 43.8
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 4.0e-56 223.0 411 40.6
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.2e-55 221.5 416 41.1
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.5e-55 221.1 437 40.7
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 2.6e-55 220.3 371 43.7
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 3.4e-55 219.9 391 41.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 3.4e-55 219.9 339 43.4
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 5.7e-55 219.2 428 39.3
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 1.8e-53 214.2 412 39.6
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.6e-52 211.1 455 36.5
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 2.0e-52 210.7 399 41.4
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 4.5e-52 209.5 433 39.3
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.0e-51 208.4 376 43.4
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 5.0e-51 206.1 374 39.6
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 6.6e-51 205.7 427 39.8
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 3.3e-50 203.4 406 38.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 4.3e-50 203.0 564 34.9
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 4.3e-50 203.0 367 39.5
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 9.5e-50 201.8 396 38.6
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 2.3e-48 197.2 452 39.2
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 6.8e-48 195.7 366 39.9
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 6.8e-48 195.7 476 37.8
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 8.9e-48 195.3 399 40.6
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 7.5e-47 192.2 335 40.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.3e-46 191.4 478 36.8
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 2.9e-46 190.3 455 35.6
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 4.9e-46 189.5 397 39.5
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.1e-45 188.3 425 36.9
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.4e-45 187.2 393 41.2
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.2e-45 186.8 372 40.9
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 9.2e-45 185.3 433 38.8
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 5.9e-44 182.6 364 37.6
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.0e-43 180.3 463 35.9
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.9e-43 179.9 564 33.3
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 4.3e-42 176.4 463 35.6
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.2e-41 172.6 436 36.9
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.0e-40 169.9 273 46.5
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 6.8e-40 169.1 449 33.0
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 6.8e-40 169.1 398 37.2
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.0e-39 167.5 446 33.9
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 2.0e-39 167.5 433 32.3
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 2.6e-39 167.2 445 31.7
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 4.4e-39 166.4 447 31.5
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 4.4e-39 166.4 368 34.8
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.8e-39 165.2 542 33.0
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 1.3e-38 164.9 433 33.7
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 3.7e-38 163.3 316 39.2
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.4e-37 161.4 379 36.4
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 5.4e-37 159.5 405 36.3
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 7.0e-37 159.1 440 32.0
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 2.0e-36 157.5 439 32.1
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.0e-36 157.5 413 31.7
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.0e-36 157.5 395 35.4
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.0e-36 157.5 566 31.4
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 4.6e-36 156.4 386 33.4
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 4.6e-36 156.4 386 33.4
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 4.6e-36 156.4 386 33.4
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 6.0e-36 156.0 449 33.4
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 1.0e-35 155.2 386 35.2
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.3e-35 154.1 412 34.2
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 3.0e-35 153.7 443 32.1
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 3.0e-35 153.7 363 37.7
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 5.0e-35 152.9 564 31.0
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 8.6e-35 152.1 374 37.2
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 7.3e-34 149.1 388 32.7
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.6e-33 147.9 314 38.9
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 2.0e-31 141.0 370 34.6
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 4.4e-31 139.8 172 51.7
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.3e-30 138.3 385 35.1
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 6.4e-30 136.0 404 33.4
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 2.4e-29 134.0 387 34.6
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 4.1e-29 133.3 428 34.6
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 3.5e-28 130.2 338 36.1
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 4.6e-28 129.8 389 35.2
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 6.0e-28 129.4 104 62.5
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 6.0e-28 129.4 104 62.5
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 6.0e-28 129.4 255 43.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 7.8e-28 129.0 325 37.2
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 5.1e-27 126.3 133 55.6
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.3e-26 123.6 494 28.1
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 1.4e-24 118.2 108 66.7
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 1.4e-24 118.2 108 66.7
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 1.2e-23 115.2 184 44.6
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 4.4e-23 113.2 258 34.5
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 4.4e-23 113.2 456 27.0
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 6.4e-22 109.4 459 27.5
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.9e-21 107.8 314 33.8
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 2.4e-21 107.5 274 36.5
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 2.1e-20 104.4 112 55.4
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 3.9e-19 100.1 426 29.8
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.9e-18 97.8 222 36.5
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 2.5e-18 97.4 96 54.2
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 5.6e-18 96.3 354 29.4
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 4.0e-16 90.1 369 29.3
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.3e-14 85.1 345 27.8
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 4.9e-14 83.2 199 34.2
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 1.0e-11 75.5 109 41.3
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 1.3e-11 75.1 69 53.6
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.5e-10 71.6 318 28.3
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 8.1e-09 65.9 314 26.4
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 1.8e-08 64.7 139 37.4


User provided reference genes

Program Settings