Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 7.7e-229 797.0 450 100.0
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 5.2e-177 624.8 459 79.5
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 5.8e-168 594.7 449 76.6
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.0e-164 582.4 449 75.5
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.2e-159 566.2 448 73.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.9e-159 565.1 449 73.5
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.4e-158 563.5 449 73.5
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.4e-158 562.8 450 72.9
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 2.4e-158 562.8 448 73.7
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 5.4e-158 561.6 449 73.3
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 7.8e-157 557.8 449 71.7
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.0e-156 557.4 449 71.0
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.3e-156 556.2 450 72.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-155 553.9 450 71.8
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 1.1e-155 553.9 450 71.8
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.9e-155 553.1 449 71.0
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 4.3e-155 552.0 449 73.1
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.0e-153 545.4 448 71.9
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 9.0e-153 544.3 448 71.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 9.0e-153 544.3 466 69.3
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-152 542.3 448 71.4
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 1.3e-151 540.4 448 70.8
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.4e-151 537.7 448 71.2
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.9e-150 536.6 448 70.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 2.4e-150 536.2 451 68.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 4.2e-150 535.4 449 69.7
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 8.7e-148 527.7 449 68.6
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.1e-146 523.1 426 72.8
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.1e-145 520.8 438 72.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.4e-145 520.4 449 66.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.8e-145 520.0 449 67.5
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 3.1e-145 519.2 448 67.0
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 3.1e-145 519.2 450 69.3
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 5.3e-145 518.5 449 69.0
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.2e-144 517.3 437 70.0
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.2e-144 517.3 447 66.4
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.2e-144 517.3 451 66.3
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.5e-144 516.9 448 68.5
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.5e-144 516.9 448 66.5
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 3.4e-144 515.8 455 67.0
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 4.5e-144 515.4 478 66.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 7.6e-144 514.6 428 70.8
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.7e-143 513.5 453 66.4
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.2e-143 513.1 448 68.5
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.8e-143 512.3 449 67.5
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 6.4e-143 511.5 450 66.0
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.2e-142 509.2 449 66.8
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.2e-142 509.2 448 66.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 9.3e-142 507.7 456 66.7
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 9.3e-142 507.7 448 68.8
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 9.3e-142 507.7 448 65.2
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 2.7e-141 506.1 446 68.8
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 3.5e-141 505.8 448 65.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 4.6e-141 505.4 446 66.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 4.6e-141 505.4 463 67.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.0e-140 504.2 451 64.7
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.3e-140 503.8 449 66.6
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.8e-140 503.4 444 65.3
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.3e-140 503.1 465 62.8
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.9e-140 502.3 448 68.3
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.1e-138 496.5 450 64.2
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 8.1e-138 494.6 449 64.1
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-137 494.2 448 67.4
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.1e-137 494.2 444 65.1
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.4e-137 493.0 448 67.0
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 3.1e-137 492.7 452 65.3
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 4.5e-136 488.8 449 63.0
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 7.6e-136 488.0 455 63.5
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 2.2e-135 486.5 446 63.7
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 3.8e-135 485.7 446 64.6
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.5e-134 483.0 442 64.9
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 9.3e-134 481.1 459 63.4
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.6e-133 480.3 455 62.4
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.7e-133 479.6 448 64.7
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.5e-133 479.2 449 63.9
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.0e-132 477.6 446 64.3
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.8e-132 476.9 453 66.2
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 3.9e-132 475.7 450 62.7
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 5.1e-132 475.3 449 63.5
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 8.7e-132 474.6 448 64.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 3.3e-131 472.6 457 62.6
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 5.8e-128 461.8 448 63.8
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.3e-127 460.7 405 65.9
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 4.9e-127 458.8 450 60.7
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.7e-125 453.0 391 69.8
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 7.9e-125 451.4 448 62.3
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.0e-124 449.5 452 62.4
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 5.1e-124 448.7 448 61.2
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.9e-123 446.8 439 62.2
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.9e-123 446.8 439 62.2
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 4.3e-123 445.7 701 46.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.8e-122 443.0 425 63.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 6.3e-122 441.8 448 62.7
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.4e-121 439.9 448 61.8
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.9e-110 403.7 327 73.7
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 9.1e-105 384.8 363 65.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 1.5e-104 384.0 466 52.4
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 4.4e-99 365.9 327 67.9
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.4e-97 360.1 392 57.1
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 9.1e-97 358.2 372 57.8
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.2e-96 357.8 436 53.2
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 7.7e-96 355.1 450 52.7
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 4.2e-94 349.4 459 49.7
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.2e-92 342.4 432 51.9
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.7e-91 338.2 403 54.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.6e-88 330.9 463 47.9
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 4.5e-88 329.3 468 49.1
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.4e-84 317.8 421 51.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.4e-83 313.2 280 65.7
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.1e-78 298.1 360 53.9
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.2e-77 294.7 277 60.6
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-71 275.0 228 71.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 5.6e-70 269.2 245 65.3
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 5.4e-65 252.7 340 52.4
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 6.6e-63 245.7 204 71.1
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.1e-60 238.4 374 49.7
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 8.9e-60 235.3 250 62.8
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 7.5e-59 232.3 265 61.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 5.8e-51 206.1 199 59.3
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.2e-50 204.1 317 47.3
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 9.6e-46 188.7 458 34.7
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 3.6e-45 186.8 369 39.0
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 6.8e-44 182.6 372 38.2
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.9e-42 177.2 128 75.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-42 176.8 177 59.9
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.4e-41 174.9 273 45.8
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-40 171.4 199 53.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.1e-38 165.2 439 34.9
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.3e-37 161.8 155 60.0
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 5.4e-33 146.4 158 58.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 6.0e-32 142.9 215 47.9
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.5e-27 128.3 133 60.9
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.5e-27 128.3 147 56.5
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.9e-26 123.2 181 47.0
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.9e-25 121.3 92 72.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 6.9e-20 102.8 67 85.1
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 4.5e-19 100.1 112 58.9
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.3e-18 98.6 60 85.0
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 2.5e-17 94.4 95 65.3
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 2.5e-14 84.3 190 40.5
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.4e-11 73.9 199 34.7
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 3.3e-06 57.4 43 74.4


User provided reference genes

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