Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.7e-44 182.2 86 100.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 3.2e-43 177.9 86 96.5
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.0e-33 146.4 85 78.8
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.1e-32 142.9 85 76.5
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.0e-32 142.1 85 76.5
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 77.4
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 76.2
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 6.3e-31 137.1 84 76.2
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.1e-30 136.3 84 75.0
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.1e-30 136.3 84 75.0
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.1e-30 136.3 86 73.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 73.3
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 75.0
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 75.0
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 4.1e-30 134.4 86 70.9
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.3e-30 134.0 84 73.8
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 7.0e-30 133.7 84 75.0
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 69.8
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 68.6
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 69.8
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-28 129.4 86 66.3
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 2.9e-28 128.3 86 66.3
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 3.8e-28 127.9 80 71.2
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 3.8e-28 127.9 80 70.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 66.3
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 5.0e-28 127.5 84 66.7
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.5e-28 126.7 86 62.8
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 62.8
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 62.8
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 62.8
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 3.2e-27 124.8 84 64.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 5.5e-27 124.0 95 61.1
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 9.4e-27 123.2 86 61.6
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 9.4e-27 123.2 85 63.5
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 65.1
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 62.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.1e-26 122.1 98 58.2
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 2.7e-26 121.7 84 69.0
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 4.7e-26 120.9 86 64.0
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 4.7e-26 120.9 86 61.6
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 6.1e-26 120.6 86 66.3
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 62.8
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 67.4
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 61.6
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.4e-25 119.4 79 65.8
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-25 119.4 79 65.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 64.0
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 62.8
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 61.6
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 65.8
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 65.8
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 64.6
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 79 64.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 86 66.3
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.3e-25 118.6 78 65.4
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.0e-25 117.9 81 61.7
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 82 62.2
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 8.8e-25 116.7 82 59.8
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.2e-24 116.3 85 61.2
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.6e-24 115.2 115 50.4
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.6e-24 115.2 76 64.5
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 3.3e-24 114.8 79 62.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.4e-24 114.4 86 60.5
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 4.4e-24 114.4 75 64.0
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 4.4e-24 114.4 75 64.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 5.7e-24 114.0 71 69.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 5.7e-24 114.0 71 69.0
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 9.7e-24 113.2 85 56.5
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 9.7e-24 113.2 84 59.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.3e-23 112.8 95 55.8
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.3e-23 112.8 86 54.7
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.7e-23 112.5 76 64.5
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 59.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 59.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.2e-23 112.1 73 65.8
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.2e-23 112.1 95 55.8
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.2e-23 112.1 84 63.1
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 3.7e-23 111.3 68 70.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.7e-23 111.3 86 58.1
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.8e-23 110.9 86 54.7
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 6.3e-23 110.5 69 69.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 6.3e-23 110.5 77 63.6
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.1e-22 109.8 84 54.8
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.4e-22 109.4 86 57.0
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.4e-22 109.4 76 57.9
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.4e-22 109.4 76 57.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 2.4e-22 108.6 84 63.1
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.1e-22 108.2 86 57.0
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-22 108.2 73 64.4
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 4.1e-22 107.8 75 58.7
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 5.3e-22 107.5 86 55.8
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 9.1e-22 106.7 84 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.2e-21 106.3 76 59.2
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-21 105.9 68 67.6
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.6e-21 105.9 79 55.7
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.7e-21 105.1 79 57.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 3.5e-21 104.8 79 55.7
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.5e-21 104.8 68 64.7
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 7.7e-21 103.6 86 53.5
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 7.7e-21 103.6 86 55.8
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.0e-20 103.2 73 56.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.3e-20 102.8 86 52.3
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 84 61.9
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.7e-20 102.4 86 52.3
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.7e-20 102.4 72 56.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 2.2e-20 102.1 68 64.7
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.2e-20 102.1 74 58.1
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.2e-20 102.1 80 55.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 3.8e-20 101.3 87 57.5
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 3.8e-20 101.3 79 54.4
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.8e-20 101.3 82 53.7
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.8e-20 101.3 80 53.8
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.8e-20 101.3 80 53.8
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 5.0e-20 100.9 86 52.3
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 5.0e-20 100.9 63 66.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 5.0e-20 100.9 86 54.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 8.5e-20 100.1 86 53.5
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.1e-19 99.8 58 72.4
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.9e-19 99.0 68 63.2
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 5.5e-19 97.4 84 51.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 7.2e-19 97.1 85 51.8
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.2e-19 97.1 77 55.8
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.4e-19 96.7 73 58.9
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 9.4e-19 96.7 83 47.0
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.2e-18 96.3 70 61.4
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.1e-18 95.5 86 52.3
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.7e-18 95.1 71 54.9
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 3.6e-18 94.7 72 56.9
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.1e-18 94.0 58 67.2
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.1e-18 94.0 77 54.5
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.3e-17 92.0 54 74.1
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 2.3e-17 92.0 84 51.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.2e-17 90.9 86 52.3
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.2e-16 89.7 86 50.0
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.5e-16 89.4 85 47.1
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 2.0e-16 89.0 68 57.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.4e-16 88.2 72 52.8
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 4.4e-16 87.8 54 66.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 9.8e-16 86.7 53 69.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 3.7e-15 84.7 99 45.5
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 3.7e-15 84.7 68 54.4
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 3.7e-15 84.7 52 69.2
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 8.3e-15 83.6 60 60.0
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 8.3e-15 83.6 44 81.8
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.1e-14 83.2 98 44.9
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 2.4e-14 82.0 74 55.4
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.1e-14 81.6 99 44.4
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.6e-13 79.3 52 65.4
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.8e-12 74.7 68 51.5
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 4.2e-11 71.2 62 45.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.2e-10 69.7 72 47.2
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.4e-09 66.2 57 50.9
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.0e-09 65.1 59 52.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 3.4e-08 61.6 41 61.0
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 7.5e-08 60.5 57 40.4
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 7.5e-08 60.5 59 52.5
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 4.9e-07 57.8 46 56.5
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 4.9e-07 57.8 60 41.7
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 2.4e-06 55.5 47 44.7


User provided reference genes

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