Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 7.3e-70 267.3 155 100.0
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.6e-48 194.9 162 80.2
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 8.1e-45 184.1 103 83.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 6.9e-44 181.0 156 69.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 9.0e-44 180.6 156 66.7
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 9.0e-44 180.6 156 60.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.2e-43 180.3 149 63.1
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.2e-43 180.3 157 59.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.5e-43 179.9 153 60.8
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.0e-43 179.5 138 60.9
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.6e-43 179.1 158 64.6
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 7.6e-43 177.6 156 59.6
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 9.9e-43 177.2 158 72.8
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.3e-42 176.8 156 65.4
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.2e-42 176.0 158 57.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 3.8e-42 175.3 158 57.0
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 4.9e-42 174.9 157 66.9
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 6.4e-42 174.5 161 68.3
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.1e-41 173.7 158 56.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.9e-41 172.9 102 75.5
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 4.2e-41 171.8 100 76.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 7.1e-41 171.0 156 67.9
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.2e-40 170.2 142 73.9
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.1e-40 169.5 128 80.5
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 160 67.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.1e-40 169.5 103 73.8
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 158 56.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.1e-40 169.5 158 54.4
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.0e-39 167.2 156 60.3
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.3e-39 166.8 94 79.8
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.3e-39 166.8 94 79.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.7e-39 166.4 158 55.7
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 5.1e-39 164.9 160 55.0
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 5.1e-39 164.9 160 55.0
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 5.1e-39 164.9 159 54.7
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.1e-39 164.9 137 71.5
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 6.6e-39 164.5 157 55.4
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 6.6e-39 164.5 161 68.9
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.7e-39 164.1 123 80.5
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 8.7e-39 164.1 102 72.5
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 8.7e-39 164.1 152 55.3
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-38 163.7 158 54.4
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.5e-38 163.3 142 73.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.5e-38 163.3 102 70.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.9e-38 162.9 103 70.9
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.5e-38 162.5 133 59.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.5e-38 162.5 140 72.9
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 2.5e-38 162.5 159 67.3
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 3.3e-38 162.2 141 72.3
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.3e-38 162.2 157 60.5
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 4.3e-38 161.8 141 61.0
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-38 161.8 150 69.3
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-38 161.8 150 69.3
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 4.3e-38 161.8 150 69.3
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 4.3e-38 161.8 103 69.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 5.6e-38 161.4 153 54.2
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 5.6e-38 161.4 152 52.6
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.6e-38 161.4 149 57.0
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.3e-38 161.0 162 61.1
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 9.6e-38 160.6 162 60.5
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 9.6e-38 160.6 161 60.2
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.3e-37 160.2 84 84.5
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.3e-37 160.2 136 65.4
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.6e-37 159.8 155 54.2
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 154 53.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.1e-37 159.5 82 82.9
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.8e-37 159.1 153 56.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.8e-37 159.1 82 85.4
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.8e-37 159.1 82 85.4
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.8e-37 159.1 151 55.6
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 3.6e-37 158.7 159 52.8
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.6e-37 158.7 126 61.9
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.6e-37 158.7 138 71.7
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.8e-37 158.3 135 65.2
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 4.8e-37 158.3 102 65.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 4.8e-37 158.3 158 62.0
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 4.8e-37 158.3 156 52.6
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.8e-37 158.3 159 54.1
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 6.2e-37 157.9 142 55.6
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 6.2e-37 157.9 120 64.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.2e-37 157.9 132 59.1
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-36 157.1 155 53.5
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.1e-36 157.1 144 54.9
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.4e-36 156.8 136 56.6
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.4e-36 156.8 134 69.4
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.8e-36 156.4 139 61.2
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.4e-36 156.0 89 77.5
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.4e-36 156.0 127 59.8
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 4.0e-36 155.2 130 58.5
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.0e-36 155.2 137 70.1
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 5.3e-36 154.8 142 57.0
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 6.9e-36 154.5 91 76.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.2e-35 153.7 134 59.0
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.0e-35 152.9 125 60.8
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 4.5e-35 151.8 141 56.7
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 5.8e-35 151.4 159 62.3
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.3e-34 150.2 138 64.5
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.9e-34 149.1 149 61.1
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 2.9e-34 149.1 135 68.1
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 3.8e-34 148.7 96 69.8
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.4e-34 147.9 90 73.3
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.9e-33 146.4 75 82.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.4e-33 146.0 143 65.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.4e-33 146.0 149 58.4
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.4e-33 144.8 108 64.8
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 7.1e-33 144.4 149 63.8
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 7.1e-33 144.4 143 65.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.1e-32 142.9 102 66.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.5e-32 142.1 74 83.8
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 4.6e-32 141.7 94 70.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.9e-31 138.7 103 66.0
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.6e-29 133.3 153 48.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 8.1e-29 131.0 135 67.4
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.6e-27 125.9 85 65.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.3e-26 123.6 85 64.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.7e-26 123.2 170 45.3
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 6.5e-26 121.3 156 46.8
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.9e-25 119.8 112 72.3
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 2.5e-25 119.4 89 61.8
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 9.3e-25 117.5 108 71.3
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.9e-23 112.1 94 56.4
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.5e-22 110.2 53 84.9
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 4.3e-22 108.6 52 86.5
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 7.4e-22 107.8 67 71.6
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.8e-21 105.9 125 45.6
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 2.6e-19 99.4 91 48.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 3.4e-19 99.0 136 44.1
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 5.0e-18 95.1 75 54.7
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.4e-17 93.6 74 52.7
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.9e-17 93.2 52 76.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.0e-15 87.4 156 44.9
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 2.3e-15 86.3 85 56.5
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 6.7e-15 84.7 77 79.2
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 1.5e-14 83.6 56 66.1
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.3e-14 82.0 88 51.1
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 3.1e-12 75.9 76 50.0
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 86 40.7
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.9e-10 69.3 81 63.0
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.2e-09 65.9 47 61.7
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 7.2e-09 64.7 46 63.0
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 7.9e-08 61.2 39 66.7
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.0e-07 59.3 47 57.4


User provided reference genes

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