Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G121400 Manihot esculenta HOM05D004233 ORTHO05D003507 6.2e-61 237.3 120 100.0
Potri.001G249500 Populus trichocarpa HOM05D004233 ORTHO05D003507 4.5e-19 98.2 124 54.8
Nn2g13635 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.1e-16 89.4 116 50.0
Actinidia25149 Actinidia chinensis HOM05D004233 ORTHO05D003507 4.0e-15 85.1 119 46.2
Potri.009G043501 Populus trichocarpa HOM05D004233 ORTHO05D003507 8.8e-15 84.0 125 47.2
Duzib150G0257 Durio zibethinus HOM05D004233 ORTHO05D003507 2.6e-14 82.4 127 43.3
Haze_24266 Corylus avellana HOM05D004233 ORTHO05D003507 1.3e-13 80.1 86 54.7
Gohir.D05G090600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 2.8e-13 79.0 127 42.5
Gorai.009G093100 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.8e-13 79.0 127 42.5
Hma1.2p1_0227F.1_g096330 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 2.8e-13 79.0 120 45.8
Gohir.A07G102900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.7e-13 78.6 129 43.4
Ciclev10029412m.g Citrus clementina HOM05D004233 ORTHO05D003507 4.8e-13 78.2 128 41.4
Gohir.A05G089700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.3e-13 77.4 127 40.9
Gohir.D07G106900 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.1e-12 77.0 129 42.6
Rhsim13G0071800 Rhododendron simsii HOM05D004233 ORTHO05D003507 1.8e-12 76.3 110 45.5
Gorai.001G115000 Gossypium raimondii HOM05D004233 ORTHO05D003507 2.4e-12 75.9 111 44.1
CiPaw.13G080500 Carya illinoinensis HOM05D004233 ORTHO05D003507 4.1e-12 75.1 103 50.5
TAR623G0525 Trochodendron aralioides HOM05D004233 ORTHO05D003507 5.4e-12 74.7 112 46.4
CiPaw.14G060900 Carya illinoinensis HOM05D004233 ORTHO05D003507 7.0e-12 74.3 106 43.4
DCAR_007388 Daucus carota HOM05D004233 ORTHO05D003507 9.1e-12 73.9 109 43.1
Hma1.2p1_0763F.1_g214800 Hydrangea macrophylla HOM05D004233 ORTHO05D003507 1.2e-11 73.6 110 44.5
Nn1g02891 Nelumbo nucifera HOM05D004233 ORTHO05D003507 2.7e-11 72.4 107 45.8
QL01p037420 Quercus lobata HOM05D004233 ORTHO05D003507 2.7e-11 72.4 105 47.6
Aqoxy4G02651 Aquilegia oxysepala HOM05D004233 ORTHO05D003507 4.5e-11 71.6 113 41.6
Sed0004609 Sechium edule HOM05D025966 ORTHO05D003507 1.1e-09 67.0 96 45.8
Sabra16G0108400 Salix brachista HOM05D004233 ORTHO05D003507 2.5e-09 65.9 117 40.2
Cc01_g13980 Coffea canephora HOM05D004233 ORTHO05D003507 4.2e-09 65.1 107 38.3
Glyma.11G176100 Glycine max HOM05D010371 ORTHO05D003507 5.5e-09 64.7 87 43.7
Manes.09G103100 Manihot esculenta HOM05D004233 ORTHO05D003507 7.2e-09 64.3 117 40.2
TAR369G1066 Trochodendron aralioides HOM05D004233 ORTHO05D003507 7.2e-09 64.3 86 50.0
Gorai.003G124100 Gossypium raimondii HOM05D004233 ORTHO05D003507 9.5e-09 63.9 92 41.3
Gohir.A03G049600 Gossypium hirsutum HOM05D004233 ORTHO05D003507 1.2e-08 63.5 131 37.4
TWI79G1354 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 1.6e-08 63.2 83 50.6
Dinv37074 Davidia involucrata HOM05D004233 ORTHO05D003507 2.8e-08 62.4 117 37.6
Lsat_1_v5_gn_9_35941 Lactuca sativa HOM05D004233 ORTHO05D003507 2.8e-08 62.4 82 43.9
QL07p036016 Quercus lobata HOM05D004233 ORTHO05D003507 2.8e-08 62.4 110 42.7
Thecc.05G020400 Theobroma cacao HOM05D004233 ORTHO05D003507 4.7e-08 61.6 120 39.2
Gohir.D03G117700 Gossypium hirsutum HOM05D004233 ORTHO05D003507 8.0e-08 60.8 92 40.2
Phvul.006G065200 Phaseolus vulgaris HOM05D010371 ORTHO05D003507 8.0e-08 60.8 87 42.5
Rhsim04G0131700 Rhododendron simsii HOM05D004233 ORTHO05D003507 8.0e-08 60.8 120 38.3
Sed0007794 Sechium edule HOM05D025966 ORTHO05D003507 8.0e-08 60.8 98 42.9
TWI77G0758 Tripterygium wilfordii HOM05D004233 ORTHO05D003507 8.0e-08 60.8 131 35.9
Nn2g11404 Nelumbo nucifera HOM05D004233 ORTHO05D003507 1.0e-07 60.5 105 40.0
Potri.006G097700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.0e-07 60.5 115 36.5
Potri.016G112700 Populus trichocarpa HOM05D004233 ORTHO05D003507 1.0e-07 60.5 112 37.5
Sabra09G0030900 Salix brachista HOM05D004233 ORTHO05D003507 1.0e-07 60.5 67 58.2
Aa31LG5G6840 Aethionema arabicum HOM05D005325 ORTHO05D003507 1.4e-07 60.1 114 36.8
Glyma.18G065800 Glycine max HOM05D010371 ORTHO05D003507 1.4e-07 60.1 111 37.8
VMungo0540G0421 Vigna mungo HOM05D010371 ORTHO05D003507 1.4e-07 60.1 87 41.4
TPR.G24023 Trifolium pratense HOM05D010371 ORTHO05D003507 1.8e-07 59.7 118 36.4
Thhalv10009101m.g Eutrema salsugineum HOM05D005325 ORTHO05D003507 2.3e-07 59.3 111 39.6
BraA09t41987Z Brassica rapa HOM05D005325 ORTHO05D003507 3.0e-07 58.9 97 43.3
CARHR007020 Cardamine hirsuta HOM05D005325 ORTHO05D003507 3.0e-07 58.9 126 38.1
Migut.N00891 Erythranthe guttata HOM05D004233 ORTHO05D003507 3.0e-07 58.9 110 41.8
Gohir.A09G163800 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-07 58.9 87 46.0
Gohir.D09G159300 Gossypium hirsutum HOM05D004233 ORTHO05D003507 3.0e-07 58.9 87 46.0
Gorai.006G181000 Gossypium raimondii HOM05D004233 ORTHO05D003507 3.0e-07 58.9 87 46.0
BcaC07g42009 Brassica carinata HOM05D005325 ORTHO05D003507 4.0e-07 58.5 111 42.3
Prupe.6G060400 Prunus persica HOM05D012510 ORTHO05D015115 4.0e-07 58.5 128 36.7
C08p50660 Brassica napus HOM05D005325 ORTHO05D003507 5.2e-07 58.2 97 43.3
BolC8t52594H Brassica oleracea HOM05D005325 ORTHO05D003507 5.2e-07 58.2 97 43.3
CiPaw.09G207200 Carya illinoinensis HOM05D004233 ORTHO05D003507 5.2e-07 58.2 110 39.1
Duzib093G0978 Durio zibethinus HOM05D004233 ORTHO05D003507 5.2e-07 58.2 116 40.5
Duzib128G0556 Durio zibethinus HOM05D004233 ORTHO05D003507 6.8e-07 57.8 116 41.4
RcHm_v2.0_Chr3g0463681 Rosa chinensis HOM05D004233 ORTHO05D003507 6.8e-07 57.8 111 37.8
Aa31LG1G6560 Aethionema arabicum HOM05D005325 ORTHO05D003507 8.9e-07 57.4 108 39.8
A10p05870 Brassica napus HOM05D005325 ORTHO05D003507 1.2e-06 57.0 94 43.6
Duzib106G0630 Durio zibethinus HOM05D004233 ORTHO05D003507 1.2e-06 57.0 127 34.6
FAN09G0897 Fragaria x ananassa HOM05D004233 ORTHO05D003507 1.2e-06 57.0 111 36.9
Glyma.14G192400 Glycine max HOM05D010371 ORTHO05D003507 1.2e-06 57.0 111 37.8
MBI06_g42853_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.2e-06 57.0 114 38.6
BraA10t42849Z Brassica rapa HOM05D005325 ORTHO05D003507 1.5e-06 56.6 95 43.2
MBI05_g30571_MAGBIO Magnolia biondii HOM05D004233 ORTHO05D003507 1.5e-06 56.6 96 43.8
Sabra06G0075200 Salix brachista HOM05D004233 ORTHO05D003507 1.5e-06 56.6 105 37.1
AL1G17450 Arabidopsis lyrata HOM05D005325 ORTHO05D003507 2.0e-06 56.2 108 39.8
Carub.0001s0660 Capsella rubella HOM05D005325 ORTHO05D003507 2.6e-06 55.8 113 39.8
COL.COLO4_14571 Corchorus olitorius HOM05D004233 ORTHO05D003507 2.6e-06 55.8 119 37.8
Medtr3g462980 Medicago truncatula HOM05D010371 ORTHO05D003507 2.6e-06 55.8 111 36.0
Psat2g059280 Pisum sativum HOM05D010371 ORTHO05D003507 2.6e-06 55.8 110 36.4
AT1G07300 Arabidopsis thaliana HOM05D005325 ORTHO05D003507 3.4e-06 55.5 121 37.2
Ciclev10013109m.g Citrus clementina HOM05D004233 ORTHO05D003507 3.4e-06 55.5 116 35.3
FvH4_6g11920 Fragaria vesca HOM05D004233 ORTHO05D003507 3.4e-06 55.5 111 36.0
FAN14G3430 Fragaria x ananassa HOM05D004233 ORTHO05D003507 3.4e-06 55.5 111 36.0
FAN14G4547 Fragaria x ananassa HOM05D004233 ORTHO05D003507 3.4e-06 55.5 111 36.0
Cpa.g.sc163.4 Carica papaya HOM05D004233 ORTHO05D003507 4.4e-06 55.1 74 45.9
FAN02G0664 Fragaria x ananassa HOM05D004233 ORTHO05D003507 4.4e-06 55.1 120 34.2
VMungo0331G0885 Vigna mungo HOM05D004233 ORTHO05D003507 4.4e-06 55.1 112 33.9
Peaxi162Scf00056g00201 Petunia axillaris HOM05D004233 ORTHO05D003507 5.7e-06 54.7 86 39.5
CANSAT54G0898 Cannabis sativa HOM05D004233 ORTHO05D003507 7.5e-06 54.3 137 38.0
Lsat_1_v5_gn_9_20140 Lactuca sativa HOM05D004233 ORTHO05D003507 7.5e-06 54.3 98 41.8
MSTRG.10228 Avicennia marina HOM05D004233 ORTHO05D003507 9.8e-06 53.9 89 38.2
Ca_05588_v3 Cicer arietinum L. HOM05D010371 ORTHO05D003507 9.8e-06 53.9 110 35.5
Glyma.03G078400 Glycine max HOM05D004233 ORTHO05D003507 9.8e-06 53.9 119 32.8
LjContig00155g0017503 Lotus japonicus HOM05D010371 ORTHO05D003507 9.8e-06 53.9 124 37.1
Phvul.010G005000 Phaseolus vulgaris HOM05D004233 ORTHO05D003507 9.8e-06 53.9 80 38.8


User provided reference genes

Program Settings