Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.3e-239 832.8 447 100.0
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.3e-82 311.2 466 47.9
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.4e-73 281.2 465 46.2
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.7e-66 256.5 466 44.4
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 9.1e-65 251.9 455 44.8
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 9.4e-62 241.9 435 42.5
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 5.4e-57 226.1 372 44.6
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.5e-54 217.2 456 39.5
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.6e-53 214.5 456 39.5
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.8e-53 213.8 458 39.7
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.7e-53 213.0 449 38.1
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.0e-52 210.3 451 38.1
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 1.3e-50 204.9 457 38.9
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 3.7e-50 203.4 449 40.3
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 1.4e-49 201.4 459 37.3
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.7e-42 177.9 457 33.9
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.3e-39 168.3 456 35.3
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.5e-38 164.9 473 31.7
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.5e-38 164.9 445 35.5
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.5e-38 164.9 452 33.0
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.5e-38 164.1 451 36.1
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 1.1e-36 158.7 457 32.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.4e-36 158.3 438 34.0
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.8e-36 156.0 468 34.8
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 2.6e-35 154.1 441 37.4
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.3e-34 151.8 439 35.3
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.7e-34 151.4 446 31.4
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.2e-34 151.0 443 34.5
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.9e-34 150.6 447 35.3
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 8.3e-34 149.1 472 34.7
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 8.3e-34 149.1 457 32.8
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 7.1e-33 146.0 465 33.5
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 2.1e-32 144.4 458 33.0
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.7e-32 144.1 432 32.2
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 7.8e-32 142.5 451 31.9
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.7e-31 141.4 462 33.8
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.7e-31 141.4 435 32.2
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.9e-31 140.2 465 31.8
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 5.1e-31 139.8 471 31.8
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.6e-31 139.4 438 29.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 6.6e-31 139.4 475 32.8
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.9e-30 137.9 466 32.4
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 2.5e-30 137.5 460 33.5
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 5.6e-30 136.3 466 32.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 7.3e-30 136.0 472 32.2
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.2e-29 135.2 434 32.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.2e-29 135.2 462 31.2
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 2.1e-29 134.4 468 34.0
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 4.7e-29 133.3 457 30.9
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.2e-29 132.9 466 32.0
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.1e-28 132.1 445 33.7
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.4e-28 131.7 451 30.6
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.0e-28 130.2 446 29.4
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.0e-28 130.2 433 32.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 5.2e-28 129.8 442 29.4
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 8.9e-28 129.0 459 32.7
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.0e-27 127.9 433 31.9
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 7.6e-27 125.9 444 31.5
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 4.9e-26 123.2 476 31.1
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.9e-25 121.3 449 29.0
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.2e-25 120.6 446 32.1
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.1e-25 119.4 429 30.1
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 9.2e-25 119.0 338 32.0
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 9.2e-25 119.0 447 30.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.8e-24 115.9 416 29.3
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 2.3e-23 114.4 472 30.3
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 1.5e-22 111.7 344 33.1
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 3.3e-22 110.5 444 29.7
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 4.3e-22 110.2 454 29.1
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 9.6e-22 109.0 427 27.2
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.6e-21 108.2 441 31.1
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.8e-21 107.5 459 32.0
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 8.1e-21 105.9 469 28.4
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.1e-20 105.5 435 26.2
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.8e-20 104.8 436 26.6
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.8e-20 104.8 454 30.0
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 3.1e-20 104.0 457 31.7
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 4.0e-20 103.6 425 28.7
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.0e-19 101.3 458 30.6
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 2.6e-19 100.9 344 31.1
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 4.4e-19 100.1 440 30.0
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 5.8e-19 99.8 444 29.7
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.7e-18 98.2 439 26.2
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.7e-18 98.2 433 26.6
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 2.2e-18 97.8 447 28.9
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 2.2e-18 97.8 447 28.9
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 2.2e-18 97.8 408 28.7
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.9e-18 96.7 427 25.3
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 6.4e-18 96.3 442 26.7
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 8.4e-18 95.9 445 29.0
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 5.4e-17 93.2 441 28.8
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 5.4e-17 93.2 435 27.6
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.2e-16 92.0 446 26.0
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.7e-16 90.9 436 25.9
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 4.6e-16 90.1 457 27.6
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 6.0e-16 89.7 441 27.9
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 7.8e-16 89.4 442 27.6
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 7.8e-16 89.4 438 29.7
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.5e-14 85.1 244 30.7
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 1.5e-14 85.1 449 27.4
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 1.5e-14 85.1 197 32.5
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.9e-14 84.7 427 24.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 7.3e-14 82.8 440 24.5
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 9.6e-14 82.4 424 26.9
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 1.3e-13 82.0 428 26.4
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 2.8e-13 80.9 196 31.6
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.6e-13 80.5 427 27.4
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.6e-13 80.5 439 25.1
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 4.8e-13 80.1 430 26.5
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.8e-13 80.1 425 27.5
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.1e-13 79.3 422 27.0
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.8e-12 78.2 451 25.7
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.0e-12 77.0 444 24.1
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 5.3e-12 76.6 452 26.3
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 1.2e-11 75.5 439 25.1
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.5e-11 75.1 442 26.7
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.0e-11 74.7 426 24.9
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.6e-11 74.3 437 25.2
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 3.4e-11 73.9 422 25.1
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.4e-11 73.9 175 33.1
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 3.4e-11 73.9 469 25.2
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 4.4e-11 73.6 433 24.5
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 5.8e-11 73.2 433 24.2
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 2.2e-10 71.2 441 25.6
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 3.8e-10 70.5 177 33.3
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.9e-10 70.1 430 25.1
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 4.9e-10 70.1 426 24.6
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 6.4e-10 69.7 312 27.2
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.4e-10 69.7 443 23.5
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.4e-10 69.7 439 24.8
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 8.4e-10 69.3 314 25.8
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 8.4e-10 69.3 431 24.8
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 8.4e-10 69.3 428 24.8
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.1e-09 68.9 446 24.4
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.1e-09 68.9 328 28.7
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.1e-09 68.9 437 23.3
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.4e-09 68.6 306 28.8
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.9e-09 68.2 101 48.5
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 2.4e-09 67.8 348 27.0
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 4.2e-09 67.0 185 33.5
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.1e-09 66.2 441 22.9
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 9.3e-09 65.9 125 36.0
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.2e-08 65.5 162 32.7
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.6e-08 65.1 173 30.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.6e-08 65.1 147 31.3
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.1e-08 64.7 410 25.4
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 6.0e-08 63.2 148 30.4
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 6.0e-08 63.2 148 30.4
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 6.0e-08 63.2 458 24.0
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 7.9e-08 62.8 162 31.5
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.0e-07 62.4 192 30.7
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.0e-07 62.4 436 25.5
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.3e-07 62.0 447 23.5
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 1.7e-07 61.6 438 26.3
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.3e-07 61.2 343 23.9
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.0e-07 60.8 155 34.2
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 6.6e-07 59.7 451 23.3
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 8.7e-07 59.3 438 25.1
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.1e-06 58.9 374 24.9
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.5e-06 58.5 332 25.3
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 5.6e-06 56.6 170 28.2


User provided reference genes

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