Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 3.7e-97 358.2 182 100.0
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 6.3e-65 251.1 189 70.4
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 7.0e-64 247.7 189 69.3
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 2.2e-57 226.1 185 68.1
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 1.1e-56 223.8 144 75.0
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 1.8e-56 223.0 180 63.9
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 1.8e-56 223.0 185 68.1
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 3.2e-56 222.2 157 71.3
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 5.4e-56 221.5 189 64.6
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 9.2e-56 220.7 191 62.8
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.2e-55 220.3 179 65.9
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.6e-55 219.9 179 65.9
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 1.6e-55 219.9 190 63.7
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 3.5e-55 218.8 191 62.8
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 4.6e-55 218.4 145 73.8
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 4.6e-55 218.4 136 81.6
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 5.9e-55 218.0 191 62.3
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 7.8e-55 217.6 170 65.9
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 1.3e-54 216.9 160 69.4
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 1.3e-54 216.9 142 74.6
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 2.3e-54 216.1 133 79.7
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 3.0e-54 215.7 158 67.1
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 3.0e-54 215.7 177 61.6
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 3.0e-54 215.7 191 61.8
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.1e-53 213.8 189 60.3
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.5e-53 213.4 188 62.2
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.5e-53 213.4 174 64.4
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 1.9e-53 213.0 184 64.7
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 1.9e-53 213.0 139 77.0
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.5e-53 212.6 195 61.5
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 4.3e-53 211.8 189 61.4
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.2e-52 210.3 129 79.1
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 4.7e-52 208.4 140 72.1
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 8.0e-52 207.6 141 74.5
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 1.8e-51 206.5 183 63.9
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 3.1e-51 205.7 134 76.1
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 5.2e-51 204.9 139 72.7
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.5e-50 203.4 191 59.7
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.0e-50 203.0 188 60.1
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.0e-50 203.0 188 60.1
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.0e-50 203.0 191 59.7
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 3.4e-50 202.2 188 60.1
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.4e-50 202.2 188 60.1
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 4.4e-50 201.8 129 76.0
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 4.4e-50 201.8 133 76.7
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 5.8e-50 201.4 183 62.8
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 9.8e-50 200.7 181 60.8
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.7e-49 199.9 132 73.5
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 2.2e-49 199.5 134 71.6
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 2.2e-49 199.5 134 71.6
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 2.2e-49 199.5 144 70.1
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 3.7e-49 198.7 171 62.6
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 3.7e-49 198.7 121 81.0
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 3.7e-49 198.7 194 57.7
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 4.9e-49 198.4 188 54.8
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 6.4e-49 198.0 185 58.9
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 6.4e-49 198.0 132 72.7
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.4e-48 196.8 167 63.5
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.9e-48 196.4 181 59.7
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.9e-48 196.4 149 66.4
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 3.2e-48 195.7 181 59.1
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 3.2e-48 195.7 148 67.6
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.2e-48 195.7 147 68.0
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 5.4e-48 194.9 144 68.1
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 5.4e-48 194.9 132 73.5
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.2e-48 194.1 119 79.0
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.6e-47 193.4 119 79.0
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 3.5e-47 192.2 138 70.3
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 3.5e-47 192.2 138 70.3
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 3.5e-47 192.2 188 53.2
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 4.6e-47 191.8 154 65.6
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 4.6e-47 191.8 154 65.6
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 4.6e-47 191.8 190 60.5
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 4.6e-47 191.8 143 69.9
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 6.0e-47 191.4 134 71.6
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 7.8e-47 191.0 138 69.6
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 7.8e-47 191.0 142 69.7
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 7.8e-47 191.0 183 60.1
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 1.0e-46 190.7 134 70.9
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.0e-46 190.7 171 59.1
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 1.3e-46 190.3 154 63.0
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.3e-46 190.3 114 80.7
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 1.7e-46 189.9 143 70.6
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.7e-46 189.9 128 75.0
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.3e-46 189.5 159 66.0
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 8.6e-46 187.6 132 69.7
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 8.6e-46 187.6 126 78.6
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.1e-45 187.2 137 69.3
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.9e-45 186.4 173 59.0
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 2.5e-45 186.0 141 70.2
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 2.5e-45 186.0 132 69.7
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 7.3e-45 184.5 134 70.1
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 8.1e-44 181.0 122 71.3
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 8.1e-44 181.0 132 68.2
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 2.3e-43 179.5 134 67.2
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 3.1e-43 179.1 140 65.0
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 3.1e-43 179.1 129 71.3
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 5.8e-42 174.9 118 78.0
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 5.8e-42 174.9 169 55.0
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 9.8e-42 174.1 164 59.8
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.7e-41 173.3 134 67.2
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.7e-41 173.3 107 78.5
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 6.4e-41 171.4 132 67.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 6.4e-41 171.4 182 53.3
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.7e-39 166.0 114 72.8
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 5.1e-38 161.8 164 57.9
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.4e-35 153.7 107 74.8
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.4e-35 153.7 90 80.0
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.8e-35 153.3 120 67.5
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.1e-35 152.5 134 60.4
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 6.8e-35 151.4 97 77.3
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.2e-34 150.6 109 71.6
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 1.1e-32 144.1 134 54.5
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.9e-32 143.3 99 72.7
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 5.4e-32 141.7 111 56.8
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 5.1e-30 135.2 139 47.5
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.5e-29 133.7 127 49.6
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 7.3e-29 131.3 148 44.6
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 5.3e-19 98.6 120 41.7
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 3.2e-16 89.4 75 64.0
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.6e-15 85.5 51 82.4
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.8e-14 83.6 100 46.0
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.0e-10 70.1 61 55.7
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 5.5e-08 62.0 65 58.5
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 2.7e-07 59.7 81 42.0


User provided reference genes

Program Settings