Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 2114.7 1073 100.0
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1656.3 1065 76.9
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1610.5 1075 75.2
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1554.7 1066 73.2
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1544.6 1075 73.4
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1536.5 1080 71.9
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1530.4 1080 71.6
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1525.0 1074 70.9
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1524.2 1074 71.4
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1516.1 1075 71.0
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1503.0 1077 69.5
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1488.4 1073 70.1
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1488.0 1074 70.4
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1487.2 1075 69.2
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1485.7 1087 69.3
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1482.2 1074 69.6
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1482.2 1075 69.0
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1479.5 1057 70.1
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1477.6 1074 68.9
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1477.6 1068 69.0
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1476.5 1074 69.6
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1471.8 1074 69.3
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1470.7 1075 68.7
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1466.1 1081 68.9
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1464.5 1081 68.9
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1457.2 1081 68.7
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1444.9 1079 68.3
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1442.6 1079 67.7
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1434.5 1073 63.8
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1434.1 1074 64.7
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1417.9 1073 63.7
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1413.7 1080 63.1
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1412.9 1074 65.9
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1412.5 1073 63.5
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1412.1 1074 66.0
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1412.1 1090 63.6
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1409.0 1092 64.9
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1406.7 1074 65.7
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1403.7 1073 63.2
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1398.3 1073 65.9
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1397.9 1073 65.8
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1397.5 1029 68.6
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1394.0 1061 64.0
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1390.2 1067 65.9
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1389.8 1072 63.3
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1388.2 1078 64.3
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1384.8 1073 63.9
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1384.4 1074 65.6
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1382.5 1077 63.6
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1377.8 1074 64.9
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1376.7 1074 64.5
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1376.3 1064 64.6
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1374.8 1058 64.7
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1372.1 1068 65.0
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1365.9 1062 64.9
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1363.6 1069 64.5
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1360.1 1061 64.8
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1360.1 1075 65.0
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1356.7 1063 64.5
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1355.9 1067 64.9
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1355.5 1069 64.0
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1355.5 1069 64.1
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1354.7 1063 64.7
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1345.5 1070 64.0
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1344.7 980 69.1
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1340.9 1073 61.0
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1339.3 1073 61.0
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1337.8 1057 64.0
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1335.1 1062 64.3
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1333.2 1078 62.5
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1329.7 931 71.2
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1326.2 1061 62.9
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1313.1 1057 62.4
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1311.6 1057 62.4
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1301.2 1053 62.3
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1299.6 1049 63.4
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1291.9 1077 61.1
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1287.3 1061 61.5
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1287.3 1067 62.2
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1286.2 1044 62.6
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1284.2 1199 56.5
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1275.8 1009 63.8
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1250.3 1067 60.6
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1223.4 1080 59.1
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1216.4 1053 59.3
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1199.1 1066 57.9
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1187.9 1058 58.7
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1176.0 1065 57.1
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1169.5 1062 58.4
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1168.3 1069 57.8
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1141.3 1043 55.7
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1132.5 1061 54.2
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 0.0e+00 1119.8 1034 56.3
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 2.0e-304 1049.3 774 68.5
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 2.4e-289 999.2 1098 48.6
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.7e-282 976.5 839 63.1
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 8.8e-223 778.1 1095 41.1
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 7.0e-220 768.5 715 54.3
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 1.6e-216 757.3 611 63.2
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 1.3e-213 747.7 1080 40.1
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.9e-209 733.8 1072 40.8
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 9.8e-206 721.5 580 65.3
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 3.8e-202 709.5 614 61.1
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 3.6e-200 703.0 799 48.8
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 1.3e-178 631.3 579 54.9
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 6.6e-170 602.4 460 64.3
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 2.1e-160 570.9 438 62.6
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 2.4e-156 557.4 653 45.9
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 8.1e-152 542.3 395 70.9
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 3.5e-131 473.8 451 54.8
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 3.7e-128 463.8 1240 28.1
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 1.7e-120 438.3 423 52.7
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 1.2e-107 395.6 686 34.3
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 3.6e-91 340.9 364 48.6
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 2.2e-88 331.6 308 58.1
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 1.2e-75 289.3 298 50.7
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 4.4e-57 227.6 354 39.3
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 5.8e-57 227.3 226 52.7
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 2.7e-30 138.7 1112 21.0
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 7.9e-30 137.1 130 53.1
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 3.3e-28 131.7 84 83.3
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 8.2e-11 73.9 201 26.9
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.3e-08 66.6 227 28.6


User provided reference genes

Program Settings