Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 7.1e-198 693.7 350 100.0
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 3.6e-165 585.1 350 82.6
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 1.7e-162 576.2 350 80.6
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 3.2e-150 535.4 357 76.2
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 2.6e-147 525.8 351 75.8
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.3e-146 523.5 352 75.0
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 1.7e-146 523.1 353 74.5
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 2.2e-146 522.7 353 73.4
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.1e-145 520.4 354 74.9
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 1.4e-145 520.0 353 72.5
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 4.1e-145 518.5 354 73.7
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 9.1e-145 517.3 352 72.4
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 2.7e-144 515.8 353 73.9
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 3.5e-144 515.4 350 74.0
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 5.9e-144 514.6 354 72.0
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 2.2e-143 512.7 353 72.8
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 5.0e-143 511.5 353 72.2
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 5.0e-143 511.5 353 72.5
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 5.0e-143 511.5 335 75.2
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 5.0e-143 511.5 353 75.1
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 8.5e-143 510.8 352 73.0
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.5e-142 510.0 353 72.8
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 1.9e-142 509.6 352 71.6
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 1.9e-142 509.6 353 72.2
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 2.5e-142 509.2 353 72.2
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.2e-142 508.8 351 71.5
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 3.2e-142 508.8 354 71.5
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 5.5e-142 508.1 351 71.5
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 5.5e-142 508.1 353 72.2
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 7.2e-142 507.7 351 71.5
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 7.2e-142 507.7 352 71.3
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.7e-141 505.8 351 71.2
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 2.7e-141 505.8 353 72.8
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 2.7e-141 505.8 353 70.5
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 8.0e-141 504.2 354 70.9
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 1.0e-140 503.8 350 71.4
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 1.0e-140 503.8 352 70.7
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.0e-140 503.8 351 73.2
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 1.8e-140 503.1 329 74.8
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 5.2e-140 501.5 351 72.6
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 2.0e-139 499.6 352 68.8
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 2.6e-139 499.2 360 68.9
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 7.5e-139 497.7 361 69.5
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 2.2e-138 496.1 360 69.2
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 9.1e-137 490.7 353 70.0
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 1.2e-136 490.3 330 73.3
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 7.7e-136 487.6 308 76.9
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 7.7e-136 487.6 354 68.9
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 1.7e-135 486.5 354 68.9
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 5.0e-135 485.0 336 70.5
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 1.2e-133 480.3 354 68.1
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.6e-133 479.9 355 68.5
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 2.8e-133 479.2 352 66.5
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 4.7e-133 478.4 307 77.5
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 8.0e-133 477.6 362 66.9
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 4.0e-132 475.3 356 68.0
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 6.8e-132 474.6 354 67.5
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 5.7e-131 471.5 352 67.6
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 9.8e-131 470.7 357 67.5
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 1.1e-129 467.2 406 60.8
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 3.1e-129 465.7 290 79.0
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 5.9e-128 461.5 357 66.7
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 7.8e-128 461.1 359 65.5
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.0e-127 460.7 333 71.5
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 1.3e-127 460.3 348 66.4
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 2.9e-127 459.1 339 67.8
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 3.8e-127 458.8 302 74.8
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 6.6e-127 458.0 302 73.8
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 4.3e-126 455.3 355 65.9
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 7.3e-126 454.5 316 71.2
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.2e-125 453.8 362 64.9
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 2.1e-125 453.0 352 65.1
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 8.0e-125 451.1 313 70.6
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 1.8e-124 449.9 362 65.2
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 2.3e-124 449.5 374 65.2
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 3.0e-124 449.1 353 65.7
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 3.0e-124 449.1 350 63.7
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 2.6e-123 446.0 312 69.9
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 2.9e-122 442.6 313 70.0
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 3.7e-122 442.2 312 68.6
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 8.3e-122 441.0 357 62.7
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 2.4e-121 439.5 356 62.4
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 3.2e-121 439.1 357 63.3
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 1.2e-120 437.2 310 69.4
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.6e-120 436.8 355 62.8
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 1.6e-120 436.8 300 70.3
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 2.0e-120 436.4 300 70.7
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 2.7e-120 436.0 300 70.3
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.5e-120 435.6 298 70.8
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 6.0e-120 434.9 300 69.7
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 1.0e-119 434.1 300 70.0
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 1.3e-119 433.7 374 62.6
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 1.7e-119 433.3 352 63.9
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.3e-119 433.0 306 67.3
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 2.3e-119 433.0 300 70.0
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 5.0e-119 431.8 310 68.7
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 5.0e-119 431.8 310 68.7
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 6.6e-119 431.4 359 62.4
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.9e-118 429.9 290 72.4
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 1.9e-118 429.9 356 62.9
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 4.3e-118 428.7 341 64.2
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 5.6e-118 428.3 302 69.9
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 3.6e-117 425.6 356 60.4
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 6.8e-116 421.4 310 69.4
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 3.7e-114 415.6 272 73.2
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.5e-110 402.9 367 58.6
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 3.3e-110 402.5 363 57.3
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 2.0e-107 393.3 300 65.0
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 5.8e-107 391.7 334 62.9
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 8.3e-106 387.9 366 59.0
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 1.5e-102 377.1 308 64.6
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 3.1e-100 369.4 302 61.6
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 2.7e-96 356.3 231 77.1
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 1.7e-95 353.6 305 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 3.0e-95 352.8 297 56.2
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 1.2e-93 347.4 325 52.3
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 1.8e-92 343.6 291 61.9
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.0e-92 342.4 306 58.2
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 5.8e-91 338.6 333 55.9
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 1.1e-89 334.3 353 48.4
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 2.4e-89 333.2 267 65.2
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 5.1e-87 325.5 205 74.1
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.9e-86 323.6 316 56.0
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 4.0e-84 315.8 321 52.6
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.7e-82 310.5 290 57.6
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 1.1e-73 281.2 277 48.7
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 1.3e-63 247.7 321 41.4
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 1.1e-57 228.0 267 47.6
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 2.1e-56 223.8 144 73.6
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 1.1e-54 218.0 156 66.0
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 1.1e-49 201.4 155 62.6
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 7.2e-49 198.7 284 46.8
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 6.7e-47 192.2 202 50.5
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 4.4e-46 189.5 245 41.2
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 4.1e-44 183.0 294 36.1
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 8.5e-42 175.3 145 60.7
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 2.5e-41 173.7 325 33.5
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 6.1e-40 169.1 119 70.6
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 2.6e-38 163.7 140 59.3
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 3.4e-30 136.7 154 46.1
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 7.5e-30 135.6 107 66.4
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 3.7e-29 133.3 77 81.8
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 3.2e-25 120.2 250 34.8
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 8.8e-23 112.1 94 55.3
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 2.0e-14 84.3 53 79.2
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 2.0e-14 84.3 46 80.4
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 2.0e-14 84.3 62 61.3
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 1.6e-11 74.7 45 77.8
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 7.8e-11 72.4 53 66.0
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 1.0e-10 72.0 54 64.8
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 1.7e-10 71.2 249 25.3
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.3e-10 70.9 123 35.0
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.9e-10 70.5 58 56.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-09 68.6 115 34.8
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 2.1e-08 64.3 228 22.8
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 2.8e-08 63.9 51 60.8
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.0e-07 62.0 132 30.3
Gohir.D06G210133 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.4e-07 61.6 246 24.8
Gorai.010G256300 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.4e-07 61.6 246 24.8
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 1.4e-07 61.6 34 73.5
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 2.3e-07 60.8 115 30.4
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 2.3e-07 60.8 132 30.3
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.1e-07 60.5 132 31.1
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 5.2e-07 59.7 109 33.9
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 6.8e-07 59.3 115 29.6
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 8.9e-07 58.9 110 31.8
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.2e-06 58.5 251 21.1
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.2e-06 58.5 135 28.9
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 2.0e-06 57.8 223 22.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 7.5e-06 55.8 118 29.7
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 7.5e-06 55.8 117 29.1
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 9.8e-06 55.5 174 23.6


User provided reference genes

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