Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 2.6e-188 662.1 397 100.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.6e-148 529.3 400 79.2
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.8e-126 456.1 398 68.6
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.4e-125 453.0 398 69.6
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 8.5e-123 444.5 399 66.9
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.3e-99 367.5 397 56.2
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.3e-99 366.7 391 61.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.9e-98 363.6 397 55.4
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 7.3e-98 361.7 397 62.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 6.8e-96 355.1 397 60.5
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-95 354.4 397 59.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.4e-95 352.8 397 59.7
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 3.4e-95 352.8 397 57.7
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.3e-94 350.9 397 59.4
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.9e-93 347.1 399 59.1
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-92 344.4 397 58.7
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 4.6e-92 342.4 397 57.2
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.0e-92 342.0 400 60.5
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.0e-91 339.7 391 56.5
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.0e-91 339.7 373 56.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 8.6e-91 338.2 399 55.9
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 3.3e-90 336.3 408 54.4
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 4.3e-90 335.9 391 57.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 5.6e-90 335.5 397 55.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.6e-89 334.0 397 60.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-89 333.6 395 53.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.1e-89 333.6 395 53.7
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 4.7e-89 332.4 372 59.9
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.1e-88 331.3 397 60.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.4e-88 330.9 395 56.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.4e-88 330.9 397 58.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 8.9e-88 328.2 401 53.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 8.9e-88 328.2 401 53.9
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.5e-87 327.4 399 57.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.5e-87 327.4 397 60.2
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 7.1e-85 318.5 397 57.2
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.1e-84 317.0 398 54.5
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 4.6e-84 315.8 401 55.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.6e-83 311.6 396 51.5
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.5e-82 310.1 395 54.4
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 6.2e-81 305.4 397 50.1
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.8e-80 303.9 402 54.2
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.1e-80 303.1 401 51.6
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.0e-80 302.8 399 53.9
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.5e-79 300.8 398 53.8
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.4e-79 299.7 399 52.9
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 3.4e-79 299.7 343 61.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 5.8e-79 298.9 398 53.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 5.8e-79 298.9 397 59.2
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.9e-77 293.9 411 52.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.4e-77 293.5 409 50.6
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.7e-76 290.0 400 51.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.7e-76 290.0 349 55.9
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.8e-76 288.5 397 51.1
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.0e-75 288.1 369 53.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-75 287.0 405 51.9
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 3.9e-75 286.2 398 53.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.1e-74 284.6 370 54.9
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.8e-73 280.0 400 46.5
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.1e-72 276.6 394 47.7
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-70 270.8 396 50.0
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.2e-70 270.4 402 49.5
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 8.4e-70 268.5 399 51.9
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.9e-69 267.3 402 48.5
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 5.4e-69 265.8 360 54.7
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.2e-68 264.6 403 49.9
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.1e-68 263.8 360 54.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 4.6e-68 262.7 397 48.1
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.1e-66 258.1 392 47.2
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.3e-66 256.5 360 52.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 6.2e-65 252.3 413 46.2
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.8e-64 250.8 400 43.8
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 9.9e-63 245.0 417 44.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-62 244.6 397 46.6
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.3e-62 244.6 414 46.1
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.7e-62 244.2 400 47.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 2.2e-62 243.8 414 44.9
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 2.2e-62 243.8 384 46.6
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 3.2e-61 240.0 400 49.2
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 4.6e-60 236.1 400 45.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.3e-59 233.8 415 43.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.1e-58 231.5 413 43.3
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.5e-58 231.1 404 48.5
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 4.3e-58 229.6 417 43.2
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 4.3e-58 229.6 398 45.7
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 9.6e-58 228.4 416 42.8
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.6e-57 227.6 418 44.3
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.5e-55 219.5 299 46.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 9.9e-55 218.4 400 44.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 4.2e-53 213.0 410 49.3
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 2.3e-51 207.2 397 43.8
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.6e-49 201.1 400 38.0
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 4.8e-49 199.5 396 38.4
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 4.8e-49 199.5 396 38.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 8.1e-49 198.7 398 41.2
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.1e-48 196.8 403 42.4
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.0e-44 182.6 410 38.0
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.9e-43 179.9 341 46.0
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.9e-42 177.6 398 40.5
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.3e-42 176.8 401 42.1
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.1e-40 171.8 400 38.0
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.1e-40 171.8 403 40.7
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 5.3e-40 169.5 393 40.2
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 5.3e-40 169.5 335 45.4
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.6e-39 167.2 402 36.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.5e-39 166.4 336 39.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.8e-39 166.0 405 40.2
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.8e-39 166.0 403 39.7
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 5.8e-39 166.0 403 39.7
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 6.5e-38 162.5 336 39.0
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 8.4e-38 162.2 399 37.3
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 9.3e-37 158.7 356 42.1
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.7e-36 157.1 406 39.9
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.3e-35 154.1 336 41.7
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.4e-34 149.1 170 60.0
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.3e-33 148.3 404 39.1
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.5e-31 141.4 390 36.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 4.5e-31 139.8 402 37.6
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.0e-30 138.7 367 37.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.3e-30 138.3 398 37.2
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.3e-30 138.3 382 37.4
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.7e-30 137.9 343 42.9
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.5e-30 135.6 404 40.3
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 8.5e-30 135.6 337 36.8
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.5e-29 132.9 327 42.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 7.2e-29 132.5 338 40.2
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 2.1e-28 131.0 370 35.7
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.6e-28 129.8 342 38.9
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 4.6e-28 129.8 342 38.9
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.0e-27 128.6 329 40.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 2.3e-27 127.5 339 36.6
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.3e-27 127.5 404 35.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 3.0e-27 127.1 340 36.8
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 5.1e-27 126.3 246 44.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 6.7e-27 125.9 406 31.0
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 8.8e-27 125.6 326 38.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 5.7e-26 122.9 349 40.7
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.8e-25 120.6 210 43.8
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.8e-25 120.6 393 35.4
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 7.7e-23 112.5 391 31.7
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-22 111.3 349 39.8
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-22 111.3 349 39.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 6.5e-22 109.4 250 44.0
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.0e-19 102.1 227 43.2
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.8e-19 101.3 181 45.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 8.8e-19 99.0 350 32.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 2.8e-17 94.0 319 30.1
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 8.2e-17 92.4 340 32.4
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.1e-16 90.5 319 33.9
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 3.5e-15 87.0 395 31.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.9e-13 81.3 323 38.4
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 9.4e-13 79.0 152 52.6
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 3.6e-12 77.0 323 32.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.2e-11 73.2 389 30.1
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-10 71.6 220 38.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.5e-10 71.6 220 38.2
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 5.7e-10 69.7 333 34.5
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 7.5e-10 69.3 227 38.3
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-09 68.2 334 33.8
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.1e-08 62.4 148 35.8
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.6e-07 61.6 393 31.3


User provided reference genes

Program Settings