Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.4e-312 1073.9 796 100.0
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 2.0e-195 686.8 802 67.0
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 3.4e-195 686.0 802 63.6
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 3.7e-194 682.6 802 61.3
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 6.4e-194 681.8 801 67.7
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 6.4e-186 655.2 835 60.8
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.1e-185 654.4 808 62.4
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.9e-185 653.7 804 64.4
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 7.0e-185 651.7 804 65.3
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 2.7e-184 649.8 802 64.2
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 1.0e-183 647.9 778 66.2
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.3e-183 647.5 802 59.7
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.3e-180 636.7 780 68.8
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 4.0e-180 636.0 805 64.3
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 3.4e-179 632.9 802 67.8
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 4.4e-179 632.5 803 63.8
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 1.9e-177 627.1 741 65.0
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 7.1e-177 625.2 799 62.1
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 4.6e-176 622.5 801 63.0
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 6.0e-176 622.1 788 59.4
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.8e-173 613.2 810 63.2
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.8e-172 610.5 794 63.9
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 5.2e-172 609.0 789 58.2
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 3.4e-171 606.3 773 57.7
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.7e-168 596.7 789 63.1
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.7e-168 596.7 802 59.9
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.3e-167 594.3 790 62.2
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 6.6e-167 592.0 810 63.7
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 1.5e-166 590.9 744 62.1
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.9e-166 590.5 744 62.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 9.6e-166 588.2 790 63.7
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.1e-164 584.7 767 60.5
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.8e-164 583.9 515 65.6
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 4.0e-164 582.8 794 64.0
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 4.0e-164 582.8 794 63.9
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 6.9e-164 582.0 790 62.7
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 5.8e-163 578.9 789 59.8
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 4.2e-161 572.8 803 59.9
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 1.2e-160 571.2 799 58.2
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 3.3e-158 563.1 769 55.9
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 8.1e-157 558.5 788 54.9
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.4e-156 557.0 800 56.0
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 3.1e-156 556.6 801 60.2
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 6.9e-156 555.4 737 60.5
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 3.4e-155 553.1 764 61.0
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 5.8e-155 552.4 804 58.2
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 8.4e-154 548.5 782 59.8
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.9e-153 547.4 797 59.0
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 2.4e-153 547.0 765 59.7
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 3.0e-151 540.0 799 53.2
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 8.7e-151 538.5 752 60.9
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 2.1e-149 533.9 811 59.1
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 6.9e-148 528.9 786 56.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.0e-147 527.3 794 59.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 4.5e-147 526.2 752 57.0
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 7.6e-147 525.4 787 59.8
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 7.6e-147 525.4 787 59.8
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 7.6e-147 525.4 772 56.1
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.7e-146 524.2 788 58.4
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 3.5e-144 516.5 730 61.0
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 4.6e-144 516.2 777 62.2
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 1.0e-143 515.0 737 60.7
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.3e-143 514.6 752 60.6
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.3e-143 514.6 739 60.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-143 514.2 724 61.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 3.9e-143 513.1 812 57.6
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 5.1e-143 512.7 781 60.6
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.5e-142 511.1 792 60.1
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.9e-142 510.8 796 50.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 4.3e-142 509.6 814 53.1
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 4.3e-142 509.6 796 60.4
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.8e-140 504.2 779 54.9
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.3e-138 498.0 505 65.1
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 2.9e-138 496.9 802 53.4
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.9e-138 496.9 787 51.1
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 2.7e-136 490.3 773 51.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 1.0e-135 488.4 856 51.1
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.3e-135 488.0 764 52.0
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.8e-133 480.3 821 54.0
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 4.8e-133 479.6 801 59.9
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.3e-130 471.5 780 54.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 6.5e-130 469.2 826 56.4
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 1.9e-129 467.6 802 55.4
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.0e-127 461.8 796 55.7
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.4e-127 461.5 802 53.1
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.4e-127 461.5 786 54.2
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 1.9e-126 457.6 785 47.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 2.2e-125 454.1 786 53.4
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.5e-123 448.0 805 55.0
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 3.4e-123 446.8 784 52.8
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.2e-122 444.1 786 51.1
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 1.4e-121 441.4 748 53.5
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.0e-119 435.3 802 50.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 4.1e-116 423.3 761 46.9
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 6.5e-106 389.4 765 52.7
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 2.3e-103 380.9 494 49.8
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 7.5e-102 375.9 421 58.7
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 1.8e-95 354.8 785 44.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.1e-89 335.5 766 49.3
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 2.2e-77 294.7 745 32.8
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 4.1e-76 290.4 794 39.9
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 3.5e-75 287.3 496 41.9
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-74 283.5 567 61.6
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.5e-73 281.2 260 61.5
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 4.3e-73 280.4 567 59.4
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.5e-70 271.9 240 64.6
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 1.4e-60 238.8 489 35.8
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 1.9e-60 238.4 197 69.5
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 3.2e-60 237.7 193 72.5
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 1.7e-53 215.3 499 57.9
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.7e-51 208.0 170 67.1
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.7e-51 208.0 489 35.0
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.0e-42 179.5 381 65.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 7.3e-41 173.3 132 74.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 2.0e-38 165.2 126 76.2
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.4e-38 164.5 171 57.3
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 1.7e-37 162.2 137 73.0
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-36 157.5 259 40.5
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.6e-35 155.6 161 60.9
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-33 147.9 181 51.4
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.6e-32 145.6 167 57.5
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 2.7e-27 128.3 141 53.2
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 8.4e-21 106.7 143 51.7
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 3.2e-20 104.8 95 69.5
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 7.1e-20 103.6 156 45.5
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 3.3e-17 94.7 157 41.4
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 3.3e-17 94.7 78 69.2
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 4.8e-16 90.9 56 85.7
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 6.3e-16 90.5 80 57.5
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.4e-15 88.6 145 43.4
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 1.7e-13 82.4 54 79.6
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.8e-13 81.3 151 45.0
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 5.1e-10 70.9 63 63.5
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 5.1e-10 70.9 63 63.5
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.8e-07 62.4 52 71.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.3e-07 60.8 101 38.6
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 5.3e-07 60.8 69 55.1
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 3.4e-06 58.2 72 43.1


User provided reference genes

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