Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G110400 Manihot esculenta HOM05D003374 ORTHO05D009470 1.2e-86 323.2 165 100.0
Cfa007029 Carpinus fangiana HOM05D003374 ORTHO05D009470 3.4e-57 225.3 172 68.6
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 9.8e-57 223.8 172 68.6
QL06p052079 Quercus lobata HOM05D003374 ORTHO05D009470 2.9e-56 222.2 167 68.9
Potri.005G107800 Populus trichocarpa HOM05D003374 ORTHO05D009470 9.2e-55 217.2 170 72.4
Thecc.01G011500 Theobroma cacao HOM05D003374 ORTHO05D009470 2.7e-54 215.7 171 69.6
CiPaw.08G125800 Carya illinoinensis HOM05D003374 ORTHO05D009470 1.3e-53 213.4 172 65.1
TWI73G0454 Tripterygium wilfordii HOM05D003374 ORTHO05D009470 6.6e-53 211.1 169 66.3
Ciclev10026638m.g Citrus clementina HOM05D003374 ORTHO05D009470 1.4e-50 203.4 170 64.1
Duzib145G0002 Durio zibethinus HOM05D003374 ORTHO05D009470 6.8e-50 201.1 170 62.4
Prupe.7G175000 Prunus persica HOM05D003374 ORTHO05D009470 6.8e-50 201.1 152 70.4
Gohir.A02G174300 Gossypium hirsutum HOM05D003374 ORTHO05D009470 2.0e-49 199.5 167 62.9
Sabra05G0088300 Salix brachista HOM05D003374 ORTHO05D009470 3.7e-48 195.3 141 72.3
Atru.chr3.907 Acer truncatum HOM05D003374 ORTHO05D009470 8.3e-48 194.1 137 68.6
Cpa.g.sc6.313 Carica papaya HOM05D003374 ORTHO05D009470 3.2e-47 192.2 170 60.0
Gohir.D03G005500 Gossypium hirsutum HOM05D003374 ORTHO05D009470 4.1e-47 191.8 170 63.5
Gorai.003G005900 Gossypium raimondii HOM05D003374 ORTHO05D009470 4.1e-47 191.8 170 63.5
MD15G1237400 Malus domestica HOM05D003374 ORTHO05D009470 2.1e-46 189.5 149 65.8
RcHm_v2.0_Chr2g0098351 Rosa chinensis HOM05D003374 ORTHO05D009470 2.1e-46 189.5 172 62.2
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.6e-46 188.3 139 65.5
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 4.6e-46 188.3 139 65.5
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 1.0e-45 187.2 139 65.5
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 1.5e-44 183.3 139 63.3
Phvul.002G104800 Phaseolus vulgaris HOM05D003374 ORTHO05D009470 5.6e-44 181.4 174 58.0
Eucgr.I02305 Eucalyptus grandis HOM05D003374 ORTHO05D009470 1.6e-43 179.9 141 67.4
Dinv08548 Davidia involucrata HOM05D003374 ORTHO05D009470 2.8e-43 179.1 167 61.7
vmacro20496 Vaccinium macrocarpon HOM05D003374 ORTHO05D009470 6.2e-43 177.9 175 60.0
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 1.4e-42 176.8 142 66.2
Ca_24942_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009470 3.1e-42 175.6 149 63.1
Rhsim10G0205800 Rhododendron simsii HOM05D003374 ORTHO05D009470 3.1e-42 175.6 178 59.0
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 8.9e-42 174.1 177 59.9
FAN19G0939 Fragaria x ananassa HOM05D003374 ORTHO05D009470 8.9e-42 174.1 152 59.2
Glyma.11G080800 Glycine max HOM05D003374 ORTHO05D009470 5.8e-41 171.4 148 60.8
Medtr5g022970 Medicago truncatula HOM05D003374 ORTHO05D009470 1.3e-40 170.2 150 60.7
PGR102G2171 Punica granatum HOM05D003374 ORTHO05D009470 2.2e-40 169.5 174 54.6
TAR625G1139 Trochodendron aralioides HOM05D003374 ORTHO05D009470 2.2e-40 169.5 171 59.6
Hma1.2p1_0315F.1_g122600 Hydrangea macrophylla HOM05D003374 ORTHO05D009470 8.4e-40 167.5 164 61.6
Lj2g0014457 Lotus japonicus HOM05D003374 ORTHO05D009470 8.4e-40 167.5 130 65.4
Cc07_g11310 Coffea canephora HOM05D003374 ORTHO05D009470 2.4e-39 166.0 175 54.9
Cc08_g04880 Coffea canephora HOM05D003374 ORTHO05D009470 2.4e-39 166.0 175 54.9
Glyma.01G162500 Glycine max HOM05D003374 ORTHO05D009470 2.7e-38 162.5 147 56.5
Lalb_Chr09g0321441 Lupinus albus HOM05D003374 ORTHO05D009470 3.9e-37 158.7 176 52.8
VMungo1215G1047 Vigna mungo HOM05D003374 ORTHO05D009470 5.1e-37 158.3 173 57.2
Thhalv10022897m.g Eutrema salsugineum HOM05D003374 ORTHO05D009470 2.5e-36 156.0 151 56.3
Lalb_Chr05g0212181 Lupinus albus HOM05D003374 ORTHO05D009470 5.6e-36 154.8 175 51.4
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 9.6e-36 154.1 139 61.2
Duzib147G0965 Durio zibethinus HOM05D003374 ORTHO05D009470 2.1e-35 152.9 144 59.7
BcaB03g16544 Brassica carinata HOM05D003374 ORTHO05D009470 2.8e-35 152.5 166 55.4
Carub.0003s3182 Capsella rubella HOM05D003374 ORTHO05D009470 2.8e-35 152.5 167 55.1
CARHR108000 Cardamine hirsuta HOM05D003374 ORTHO05D009470 2.8e-35 152.5 139 59.7
MBI09_g46000_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009470 4.7e-35 151.8 168 53.6
Aa31LG8G14990 Aethionema arabicum HOM05D003374 ORTHO05D009470 1.4e-34 150.2 149 56.4
C07p05580 Brassica napus HOM05D003374 ORTHO05D009470 1.4e-34 150.2 168 54.8
THA.LOC104819731 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.4e-34 150.2 171 53.8
AL3G50710 Arabidopsis lyrata HOM05D003374 ORTHO05D009470 2.4e-34 149.4 164 54.3
AT2G17710 Arabidopsis thaliana HOM05D003374 ORTHO05D009470 4.0e-34 148.7 134 60.4
BraA07t28128Z Brassica rapa HOM05D003374 ORTHO05D009470 4.0e-34 148.7 170 55.3
BcaB08g34755 Brassica carinata HOM05D003374 ORTHO05D009470 5.2e-34 148.3 166 55.4
BcaC06g36303 Brassica carinata HOM05D003374 ORTHO05D009470 8.9e-34 147.5 166 54.2
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 1.2e-33 147.1 176 49.4
THA.LOC104804280 Tarenaya hassleriana HOM05D003374 ORTHO05D009470 1.5e-33 146.7 179 52.5
BcaC01g02894 Brassica carinata HOM05D003374 ORTHO05D009470 3.4e-33 145.6 167 54.5
C03p58640 Brassica napus HOM05D003374 ORTHO05D009470 3.4e-33 145.6 139 58.3
BolC3t18125H Brassica oleracea HOM05D003374 ORTHO05D009470 3.4e-33 145.6 167 54.5
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 4.4e-33 145.2 170 54.1
Nitab4.5_0006892g0010 Nicotiana tabacum HOM05D003374 ORTHO05D009470 9.9e-33 144.1 134 56.0
Potri.005G107900 Populus trichocarpa HOM05D003374 ORTHO05D009470 1.3e-32 143.7 111 65.8
A06p33690 Brassica napus HOM05D003374 ORTHO05D009470 2.9e-32 142.5 167 53.9
BraA06t26303Z Brassica rapa HOM05D003374 ORTHO05D009470 2.9e-32 142.5 167 53.9
PSO675G4674 Papaver somniferum HOM05D003374 ORTHO05D009470 2.9e-32 142.5 134 59.7
PSO541G4788 Papaver somniferum HOM05D003374 ORTHO05D009470 3.8e-32 142.1 134 59.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 1.1e-31 140.6 177 50.3
CAN.G890.28 Capsicum annuum HOM05D003374 ORTHO05D009470 1.9e-31 139.8 168 53.0
PGSC0003DMG400003663 Solanum tuberosum HOM05D003374 ORTHO05D009470 2.4e-31 139.4 171 52.0
Sopen02g028160 Solanum pennellii HOM05D003374 ORTHO05D009470 3.2e-31 139.0 171 51.5
GSVIVG01005193001 Vitis vinifera HOM05D003374 ORTHO05D009470 7.1e-31 137.9 111 64.9
MSTRG.24362 Avicennia marina HOM05D003374 ORTHO05D009470 7.8e-30 134.4 123 56.9
Actinidia22937 Actinidia chinensis HOM05D003374 ORTHO05D009470 3.0e-29 132.5 147 56.5
Aqoxy6G01986 Aquilegia oxysepala HOM05D003374 ORTHO05D009470 3.0e-29 132.5 126 58.7
CDE05G3297 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 5.1e-29 131.7 139 52.5
MSTRG.22233 Avicennia marina HOM05D003374 ORTHO05D009470 6.6e-29 131.3 117 56.4
CDE05G2149 Ceratophyllum demersum HOM05D003374 ORTHO05D009470 2.1e-27 126.3 129 50.4
SalBow6G5967 Salvia bowleyana HOM05D003374 ORTHO05D009470 1.8e-26 123.2 97 61.9
SalBow8G5385 Salvia bowleyana HOM05D003374 ORTHO05D009470 3.1e-26 122.5 97 61.9
Migut.N02761 Erythranthe guttata HOM05D003374 ORTHO05D009470 9.0e-26 120.9 125 51.2
EL10Ac9g21336 Beta vulgaris HOM05D003374 ORTHO05D009470 3.4e-25 119.0 144 53.5
COL.COLO4_22495 Corchorus olitorius HOM05D003374 ORTHO05D009470 5.8e-25 118.2 91 65.9
Oeu022073.1 Olea europaea HOM05D003374 ORTHO05D009470 1.7e-24 116.7 150 48.7
AUR62012999 Chenopodium quinoa HOM05D003374 ORTHO05D009470 2.9e-24 115.9 146 50.7
arahy.Tifrunner.gnm1.ann1.HG61QK Arachis hypogaea HOM05D003374 ORTHO05D009470 3.9e-21 105.5 97 59.8
arahy.Tifrunner.gnm1.ann1.YP763J Arachis hypogaea HOM05D003374 ORTHO05D009470 3.9e-21 105.5 97 59.8
Actinidia17405 Actinidia chinensis HOM05D000373 ORTHO05D001763 4.3e-20 102.1 126 53.2
TPR.G20269 Trifolium pratense HOM05D003374 ORTHO05D009470 9.6e-20 100.9 88 55.7
unitig_578.g16135 Utricularia gibba HOM05D003374 ORTHO05D009470 2.1e-19 99.8 108 47.2
Hund00012 Selenicereus undatus HOM05D003374 ORTHO05D009470 3.6e-19 99.0 95 56.8
Sc18g0006270 Simmondsia chinensis HOM05D003374 ORTHO05D009470 5.3e-18 95.1 82 62.2
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 1.7e-16 90.1 90 58.9
TPR.G25136 Trifolium pratense HOM05D000373 ORTHO05D001763 3.5e-14 82.4 93 60.2
Solyc02g083380.3 Solanum lycopersicum HOM05D003374 ORTHO05D009470 2.5e-12 76.3 67 55.2
ATR0346G001 Amborella trichopoda HOM05D003374 ORTHO05D009470 7.4e-12 74.7 89 48.3
Duzib145G0007 Durio zibethinus HOM05D003374 ORTHO05D009470 9.0e-10 67.8 63 58.7
Ah.01g008140 Amaranthus hybridus HOM05D003374 ORTHO05D009470 1.2e-09 67.4 88 46.6
AUR62010008 Chenopodium quinoa HOM05D003374 ORTHO05D010386 1.0e-08 64.3 83 44.6
Os04g0560700 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009470 9.3e-07 57.8 104 37.5
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 4.6e-06 55.5 116 28.4


User provided reference genes

Program Settings