Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G106300 Manihot esculenta HOM05D006321 ORTHO05D007929 3.5e-91 338.2 161 100.0
Dinv25432 Davidia involucrata HOM05D006321 ORTHO05D007929 8.9e-79 297.0 161 83.9
VMungo0540G0928 Vigna mungo HOM05D006321 ORTHO05D007929 4.4e-78 294.7 161 83.9
Glyma.01G110600 Glycine max HOM05D006321 ORTHO05D007929 2.2e-77 292.4 161 82.6
QL02p047686 Quercus lobata HOM05D006321 ORTHO05D007929 2.9e-77 292.0 160 82.5
Gohir.A06G171500 Gossypium hirsutum HOM05D006321 ORTHO05D007929 8.3e-77 290.4 159 84.9
Gorai.010G210200 Gossypium raimondii HOM05D006321 ORTHO05D007929 8.3e-77 290.4 159 84.9
Phvul.006G013600 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 8.3e-77 290.4 161 83.2
COL.COLO4_27457 Corchorus olitorius HOM05D006321 ORTHO05D007929 1.1e-76 290.0 161 83.2
Thecc.09G184700 Theobroma cacao HOM05D006321 ORTHO05D007929 1.4e-76 289.7 156 85.3
CiPaw.08G033200 Carya illinoinensis HOM05D006321 ORTHO05D007929 3.2e-76 288.5 161 83.2
Gohir.D06G179600 Gossypium hirsutum HOM05D006321 ORTHO05D007929 3.2e-76 288.5 159 84.3
Rhsim01G0118600 Rhododendron simsii HOM05D006321 ORTHO05D007929 4.1e-76 288.1 161 82.6
Duzib251G0486 Durio zibethinus HOM05D006321 ORTHO05D007929 5.4e-76 287.7 162 83.3
TWI60G1509 Tripterygium wilfordii HOM05D006321 ORTHO05D007929 5.4e-76 287.7 161 83.9
Phvul.003G138800 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 9.2e-76 287.0 161 81.4
Phvul.003G139178 Phaseolus vulgaris HOM05D006321 ORTHO05D007929 9.2e-76 287.0 161 81.4
Atru.chr7.791 Acer truncatum HOM05D006321 ORTHO05D007929 2.1e-75 285.8 157 82.2
CSS0046955 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 2.1e-75 285.8 158 81.0
Glyma.03G076300 Glycine max HOM05D006321 ORTHO05D007929 2.7e-75 285.4 161 80.1
Potri.018G143500 Populus trichocarpa HOM05D006321 ORTHO05D007929 3.5e-75 285.0 157 83.4
Sc03g0007150 Simmondsia chinensis HOM05D006321 ORTHO05D007929 4.6e-75 284.6 161 82.0
CSS0019729 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 1.7e-74 282.7 158 81.0
Solyc07g008910.3 Solanum lycopersicum HOM05D006321 ORTHO05D007929 1.7e-74 282.7 161 79.5
CAN.G279.32 Capsicum annuum HOM05D006321 ORTHO05D007929 3.0e-74 282.0 158 79.7
CAN.G547.21 Capsicum annuum HOM05D006321 ORTHO05D007929 3.0e-74 282.0 161 78.3
Medtr3g465100 Medicago truncatula HOM05D006321 ORTHO05D007929 3.9e-74 281.6 161 78.9
PGSC0003DMG400028738 Solanum tuberosum HOM05D006321 ORTHO05D007929 3.9e-74 281.6 161 77.6
Nitab4.5_0002365g0010 Nicotiana tabacum HOM05D006321 ORTHO05D007929 5.1e-74 281.2 158 77.8
THA.LOC104817778 Tarenaya hassleriana HOM05D006321 ORTHO05D007929 5.1e-74 281.2 162 79.6
CSS0021189 Camellia sinensis var. sinensis HOM05D006321 ORTHO05D007929 6.6e-74 280.8 158 80.4
Ca_14974_v3 Cicer arietinum L. HOM05D006321 ORTHO05D007929 6.6e-74 280.8 161 79.5
Ciclev10008911m.g Citrus clementina HOM05D006321 ORTHO05D007929 6.6e-74 280.8 160 78.8
arahy.Tifrunner.gnm1.ann1.CI6UTV Arachis hypogaea HOM05D006321 ORTHO05D007929 1.1e-73 280.0 160 78.1
Nitab4.5_0000366g0180 Nicotiana tabacum HOM05D006321 ORTHO05D007929 1.1e-73 280.0 158 78.5
Psat4g027120 Pisum sativum HOM05D006321 ORTHO05D007929 1.5e-73 279.6 161 78.3
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 1.9e-73 279.3 160 78.1
Potri.006G076300 Populus trichocarpa HOM05D006321 ORTHO05D007929 1.9e-73 279.3 158 81.0
A10p14640 Brassica napus HOM05D006321 ORTHO05D007929 7.3e-73 277.3 161 77.0
BraA10t43551Z Brassica rapa HOM05D006321 ORTHO05D007929 7.3e-73 277.3 161 77.0
Lalb_Chr04g0263391 Lupinus albus HOM05D006321 ORTHO05D007929 7.3e-73 277.3 160 78.8
Lj6g0010246 Lotus japonicus HOM05D006321 ORTHO05D007929 2.8e-72 275.4 161 78.9
BcaC04g19986 Brassica carinata HOM05D006321 ORTHO05D007929 4.7e-72 274.6 161 77.0
Aa31LG3G13120 Aethionema arabicum HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 76.4
Thhalv10014893m.g Eutrema salsugineum HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 76.4
MBI17_g07973_MAGBIO Magnolia biondii HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 75.8
RcHm_v2.0_Chr4g0399821 Rosa chinensis HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 78.9
TPR.G32885 Trifolium pratense HOM05D006321 ORTHO05D007929 6.2e-72 274.2 161 77.6
EL10Ac5g11827 Beta vulgaris HOM05D006321 ORTHO05D007929 8.1e-72 273.9 161 78.3
COL.COLO4_07534 Corchorus olitorius HOM05D006321 ORTHO05D007929 8.1e-72 273.9 149 84.6
TAR622G0244 Trochodendron aralioides HOM05D006321 ORTHO05D007929 8.1e-72 273.9 161 77.6
Carub.0008s1773 Capsella rubella HOM05D006321 ORTHO05D007929 1.4e-71 273.1 161 76.4
AL8G33200 Arabidopsis lyrata HOM05D006321 ORTHO05D007929 1.8e-71 272.7 161 75.8
ECA240G2363 Erigeron canadensis HOM05D006321 ORTHO05D007929 1.8e-71 272.7 161 76.4
Eucgr.C00122 Eucalyptus grandis HOM05D006321 ORTHO05D007929 1.8e-71 272.7 158 76.6
arahy.Tifrunner.gnm1.ann1.N3I1N2 Arachis hypogaea HOM05D006321 ORTHO05D007929 2.4e-71 272.3 152 80.3
FvH4_4g07380 Fragaria vesca HOM05D006321 ORTHO05D007929 2.4e-71 272.3 160 78.1
FAN12G2844 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.4e-71 272.3 160 78.1
FAN22G1279 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.4e-71 272.3 160 78.1
Sp6g18970 Schrenkiella parvula HOM05D006321 ORTHO05D007929 2.4e-71 272.3 161 75.8
GSVIVG01010872001 Vitis vinifera HOM05D006321 ORTHO05D007929 2.4e-71 272.3 155 80.6
AUR62030699 Chenopodium quinoa HOM05D006321 ORTHO05D007929 3.1e-71 271.9 161 75.2
Sed0024765 Sechium edule HOM05D006321 ORTHO05D007929 4.0e-71 271.6 154 80.5
BcaB08g36085 Brassica carinata HOM05D006321 ORTHO05D007929 5.2e-71 271.2 161 75.8
Prupe.1G076700 Prunus persica HOM05D006321 ORTHO05D007929 5.2e-71 271.2 161 77.6
AT5G57230 Arabidopsis thaliana HOM05D006321 ORTHO05D007929 6.8e-71 270.8 161 75.2
CARHR271020 Cardamine hirsuta HOM05D006321 ORTHO05D007929 6.8e-71 270.8 161 73.9
AUR62030694 Chenopodium quinoa HOM05D006321 ORTHO05D007929 6.8e-71 270.8 161 74.5
Aqoxy3G01064 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 1.2e-70 270.0 161 75.2
HanXRQChr16g0529271 Helianthus annuus HOM05D006321 ORTHO05D007929 1.5e-70 269.6 161 74.5
FAN07G2214 Fragaria x ananassa HOM05D006321 ORTHO05D007929 2.6e-70 268.9 154 79.2
ECA234G0872 Erigeron canadensis HOM05D006321 ORTHO05D007929 3.4e-70 268.5 161 75.8
Cc06_g21570 Coffea canephora HOM05D006321 ORTHO05D007929 7.6e-70 267.3 157 77.1
C09p49090 Brassica napus HOM05D006321 ORTHO05D007929 1.3e-69 266.5 169 73.4
Lsat_1_v5_gn_7_55681 Lactuca sativa HOM05D006321 ORTHO05D007929 1.3e-69 266.5 160 77.5
BolC9t57758H Brassica oleracea HOM05D006321 ORTHO05D007929 4.9e-69 264.6 166 73.5
MELO3C012967.2 Cucumis melo HOM05D006321 ORTHO05D007929 6.4e-69 264.2 154 76.0
CsaV3_3G025050 Cucumis sativus L. HOM05D006321 ORTHO05D007929 6.4e-69 264.2 154 76.6
CANSAT11G0316 Cannabis sativa HOM05D006321 ORTHO05D007929 8.4e-69 263.8 162 75.3
PGR142G1933 Punica granatum HOM05D006321 ORTHO05D007929 8.4e-69 263.8 157 79.6
MSTRG.10445 Avicennia marina HOM05D006321 ORTHO05D007929 1.9e-68 262.7 161 75.2
PSO339G6079 Papaver somniferum HOM05D006321 ORTHO05D007929 1.2e-67 260.0 162 74.1
Migut.L01889 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.6e-67 259.6 158 74.7
MD16G1249800 Malus domestica HOM05D006321 ORTHO05D007929 2.7e-67 258.8 148 82.4
Os06g0482200 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 4.6e-67 258.1 161 72.0
Cpa.g.sc95.16 Carica papaya HOM05D006321 ORTHO05D007929 6.0e-67 257.7 161 75.8
Hund14984 Selenicereus undatus HOM05D006321 ORTHO05D007929 6.0e-67 257.7 214 59.3
HanXRQChr03g0068421 Helianthus annuus HOM05D006321 ORTHO05D007929 7.8e-67 257.3 152 74.3
Os10g0162834 Oryza sativa ssp. japonica HOM05D006321 ORTHO05D007929 1.7e-66 256.1 161 71.4
SGA_v2.0_scaffold21G09650 Striga asiatica HOM05D006321 ORTHO05D007929 3.0e-66 255.4 158 72.8
HPP92_002000 Vanilla planifolia HOM05D006321 ORTHO05D007929 3.0e-66 255.4 158 70.9
PSO384G3851 Papaver somniferum HOM05D006321 ORTHO05D007929 4.3e-65 251.5 162 71.0
Actinidia01283 Actinidia chinensis HOM05D006321 ORTHO05D007929 1.6e-64 249.6 161 74.5
Ah.12g059430 Amaranthus hybridus HOM05D006321 ORTHO05D007929 1.1e-63 246.9 156 71.8
Zm00001eb161640 Zea mays HOM05D006321 ORTHO05D007929 3.1e-63 245.4 152 70.4
Nn2g12444 Nelumbo nucifera HOM05D006321 ORTHO05D007929 5.2e-63 244.6 137 79.6
Sopen07g004840 Solanum pennellii HOM05D003168 ORTHO05D003590 9.9e-62 240.4 135 78.5
SEGI_34333 Sequoiadendron giganteum HOM05D006321 ORTHO05D007929 3.8e-61 238.4 157 66.9
CDE06G2300 Ceratophyllum demersum HOM05D006321 ORTHO05D007929 6.4e-61 237.7 140 75.7
Haze_22010 Corylus avellana HOM05D006321 ORTHO05D007929 2.4e-60 235.7 151 75.5
AUR62036340 Chenopodium quinoa HOM05D006321 ORTHO05D007929 4.2e-60 235.0 135 76.3
MD13G1243200 Malus domestica HOM05D006321 ORTHO05D007929 4.6e-59 231.5 138 77.5
unitig_736.g22252 Utricularia gibba HOM05D006321 ORTHO05D007929 8.7e-58 227.3 138 75.4
Sabra18G0117000 Salix brachista HOM05D003168 ORTHO05D003525 1.1e-55 220.3 117 86.3
Psat5g235880 Pisum sativum HOM05D006321 ORTHO05D007929 1.5e-54 216.5 134 73.1
vmacro20823 Vaccinium macrocarpon HOM05D006321 ORTHO05D007929 1.3e-53 213.4 140 70.7
Sabra06G0057200 Salix brachista HOM05D006321 ORTHO05D007929 2.4e-52 209.1 183 57.4
Pp3c22_13020 Physcomitrium patens HOM05D006321 ORTHO05D007929 3.2e-52 208.8 144 63.2
Oeu030095.1 Olea europaea HOM05D006321 ORTHO05D007929 9.3e-52 207.2 122 77.9
Mapoly0003s0233 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.2e-51 206.8 139 64.0
Oeu044678.1 Olea europaea HOM05D006321 ORTHO05D007929 1.6e-51 206.5 114 79.8
Migut.G01073 Erythranthe guttata HOM05D006321 ORTHO05D007929 1.3e-50 203.4 116 79.3
Mapoly0003s0169 Marchantia polymorpha HOM05D006321 ORTHO05D007929 1.9e-49 199.5 139 62.6
PSO541G2755 Papaver somniferum HOM05D006321 ORTHO05D007929 2.1e-48 196.1 117 74.4
Peaxi162Scf00324g00017 Petunia axillaris HOM05D006321 ORTHO05D007929 4.0e-47 191.8 158 58.9
FAN17G2672 Fragaria x ananassa HOM05D006321 ORTHO05D007929 5.3e-47 191.4 156 61.5
Lj6A87G16 Lonicera japonica HOM05D006321 ORTHO05D007929 5.5e-44 181.4 98 82.7
ATR1152G025 Amborella trichopoda HOM05D006321 ORTHO05D007929 7.9e-43 177.6 96 80.2
Aqoxy108s003 Aquilegia oxysepala HOM05D006321 ORTHO05D007929 3.0e-42 175.6 138 60.1
DCAR_005801 Daucus carota HOM05D006321 ORTHO05D007929 4.8e-40 168.3 102 71.6
TAR629G2308 Trochodendron aralioides HOM05D006321 ORTHO05D007929 4.9e-37 158.3 135 60.0
COL.COLO4_32845 Corchorus olitorius HOM05D006321 ORTHO05D007929 6.5e-37 157.9 85 83.5
CBR_g19745 Chara braunii HOM05D006321 ORTHO05D007929 1.9e-36 156.4 132 57.6
BcaB05g22329 Brassica carinata HOM05D006321 ORTHO05D007929 4.2e-36 155.2 159 54.7
Dinv41168 Davidia involucrata HOM05D000015 ORTHO05D003525 5.5e-36 154.8 86 81.4
Lj6A100T20 Lonicera japonica HOM05D006321 ORTHO05D007929 1.6e-27 126.7 73 79.5
Sopen00g012850 Solanum pennellii HOM05D006321 ORTHO05D007929 4.7e-19 98.6 52 80.8
BolC2t07570H Brassica oleracea HOM05D006321 ORTHO05D007929 6.9e-15 84.7 60 66.7
C02p14450 Brassica napus HOM05D006321 ORTHO05D007929 4.1e-07 58.9 71 43.7


User provided reference genes

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