Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 9.5e-176 620.2 333 100.0
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.5e-117 426.8 331 77.0
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.1e-94 350.9 345 65.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 4.5e-93 345.5 351 65.0
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 3.8e-84 315.8 339 63.7
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 2.7e-82 309.7 337 63.2
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 8.0e-82 308.1 346 60.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.4e-80 302.4 335 58.2
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.3e-79 300.8 349 61.0
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 8.3e-79 298.1 331 56.5
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.4e-78 297.4 343 60.3
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.4e-78 296.6 338 57.7
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 2.0e-77 293.5 337 60.2
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.0e-76 291.2 343 59.2
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.3e-76 290.8 361 54.6
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 5.0e-76 288.9 349 59.9
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.0e-73 281.2 341 55.4
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.0e-73 279.6 341 55.4
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.2e-72 277.7 330 57.0
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.5e-72 277.3 355 57.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 2.6e-72 276.6 342 57.3
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.4e-72 275.8 354 55.1
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.4e-72 275.8 341 56.3
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 1.3e-71 274.2 329 55.3
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.2e-71 273.5 329 58.4
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.2e-71 273.5 336 55.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.3e-71 271.6 333 58.9
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 8.3e-71 271.6 362 51.1
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.1e-70 271.2 329 57.8
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.2e-70 269.6 346 55.5
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 5.4e-70 268.9 346 55.2
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.4e-70 268.9 352 54.0
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.6e-69 267.3 345 56.5
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 5.9e-69 265.4 334 58.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.7e-68 263.8 338 51.8
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.7e-68 263.8 338 53.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 5.0e-68 262.3 347 51.6
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 5.0e-68 262.3 343 53.6
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 6.6e-68 261.9 353 56.7
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.6e-68 261.9 340 55.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.1e-67 261.2 337 54.6
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 1.1e-67 261.2 347 52.2
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-67 261.2 339 55.8
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.1e-67 261.2 347 54.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-67 260.8 332 54.5
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.2e-66 257.7 341 54.3
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 2.8e-66 256.5 345 51.9
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.6e-66 256.1 326 56.7
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 4.7e-66 255.8 339 53.1
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.0e-66 255.0 360 49.7
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.0e-65 254.6 339 54.6
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 5.2e-65 252.3 353 51.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 5.2e-65 252.3 348 52.9
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.5e-64 250.8 342 52.0
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.0e-64 250.4 340 51.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.4e-64 249.2 325 52.6
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.8e-64 248.8 343 52.8
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.7e-63 247.3 333 51.1
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.9e-63 246.5 344 52.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 8.3e-63 245.0 334 52.1
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.4e-62 244.2 344 52.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.5e-61 239.6 334 51.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 4.6e-61 239.2 341 50.4
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.0e-61 238.8 354 49.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 7.8e-61 238.4 354 50.8
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.7e-60 237.3 336 51.5
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.3e-60 236.9 334 49.7
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.9e-60 236.1 340 51.8
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 3.9e-60 236.1 249 60.2
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.6e-60 235.3 334 51.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.3e-59 232.6 333 50.2
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.2e-58 231.1 361 48.8
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-58 231.1 326 54.9
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.6e-58 230.7 337 51.9
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 4.7e-58 229.2 336 52.4
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-57 228.0 315 51.7
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.1e-57 228.0 350 48.3
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.8e-57 227.3 332 46.7
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.0e-57 226.1 314 50.6
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 6.8e-57 225.3 348 50.6
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 8.9e-57 224.9 337 50.4
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-56 224.6 337 51.0
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.6e-56 223.4 340 50.6
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 5.8e-56 222.2 336 52.7
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 5.8e-56 222.2 359 49.9
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.2e-55 220.3 343 49.6
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 4.9e-55 219.2 352 51.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 6.4e-55 218.8 330 50.6
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.1e-54 218.0 327 49.2
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.1e-54 218.0 327 51.1
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.4e-54 217.6 407 43.2
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.2e-54 216.5 327 47.1
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.1e-54 216.1 329 49.5
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.4e-54 215.7 318 50.6
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 7.1e-54 215.3 325 48.9
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 7.1e-54 215.3 339 49.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.2e-53 214.5 335 49.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.1e-53 213.8 416 42.8
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 4.6e-53 212.6 179 69.3
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.0e-52 211.5 296 50.0
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.3e-52 211.1 330 46.4
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-50 204.1 422 41.5
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.1e-50 203.8 326 47.9
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.3e-49 200.3 324 48.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.0e-49 199.5 324 43.8
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 6.8e-49 198.7 335 46.0
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.2e-48 198.0 334 47.0
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.0e-48 197.2 320 41.9
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.6e-48 196.8 330 46.4
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.6e-48 196.8 331 47.4
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 5.8e-48 195.7 327 47.4
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 9.9e-48 194.9 329 42.6
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 2.2e-47 193.7 329 46.2
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.2e-47 193.7 327 45.6
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.2e-46 189.9 333 45.9
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.1e-45 187.2 328 43.6
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 2.7e-45 186.8 321 42.4
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 3.5e-45 186.4 336 44.0
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.5e-45 186.4 329 44.4
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.9e-43 180.6 314 43.0
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 7.3e-43 178.7 253 51.0
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.8e-42 176.8 224 52.2
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 4.7e-42 176.0 330 42.4
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.1e-41 174.9 299 42.5
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 6.8e-41 172.2 315 40.0
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.9e-39 166.8 327 41.3
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.9e-39 166.8 328 40.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 6.4e-39 165.6 326 40.2
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-38 164.5 336 39.3
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 2.4e-38 163.7 302 44.7
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.6e-37 161.0 294 40.5
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.3e-36 157.9 330 42.1
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.3e-36 157.1 335 42.7
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.0e-36 156.8 328 40.9
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.1e-35 154.8 291 43.3
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.5e-35 153.7 335 39.4
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 3.6e-34 149.8 213 46.0
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 6.2e-34 149.1 339 42.5
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.1e-33 148.3 353 41.6
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.4e-33 147.9 334 40.4
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 3.1e-33 146.7 334 43.1
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 9.9e-32 141.7 251 42.6
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 2.9e-31 140.2 135 68.9
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.1e-30 138.3 209 45.5
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 3.2e-30 136.7 225 45.3
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 3.2e-30 136.7 225 45.3
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 3.2e-30 136.7 253 42.7
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 4.2e-30 136.3 355 36.6
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 4.2e-30 136.3 363 37.2
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.4e-30 136.0 275 42.2
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 6.0e-29 132.5 219 48.4
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.0e-28 131.7 216 44.9
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.0e-28 131.7 216 44.9
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.0e-28 131.7 211 42.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 3.0e-28 130.2 341 36.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.3e-26 124.8 138 58.7
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 4.8e-26 122.9 234 43.6
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.1e-25 121.7 213 46.5
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.4e-25 121.3 321 37.4
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.4e-25 120.6 209 47.4
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.0e-24 117.5 290 34.5
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 2.6e-24 117.1 340 37.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.7e-23 114.4 310 34.2
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.7e-23 114.4 290 34.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 2.9e-23 113.6 361 33.2
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.4e-23 112.5 215 42.8
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 6.5e-15 85.9 241 34.9
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 8.4e-15 85.5 284 31.3
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.2e-14 83.2 227 40.1
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.2e-14 83.2 227 40.1
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.1e-12 76.3 58 70.7
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.1e-11 75.1 58 69.0
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 1.1e-09 68.6 433 25.6
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.0e-07 62.0 105 42.9
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.0e-07 59.7 112 43.8
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 8.4e-07 58.9 322 26.1
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 4.2e-06 56.6 246 29.3


User provided reference genes

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